Publications

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Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LAnn, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR et al..  2013.  Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.. PLoS One. 8(3):e57819.
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O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al..  2008.  Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.
Griffith KL, Wolf RE.  2004.  Genetic evidence for pre-recruitment as the mechanism of transcription activation by SoxS of Escherichia coli: the dominance of DNA binding mutations of SoxS.. J Mol Biol. 344(1):1-10.
Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.  2009.  The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.. BMC Microbiol. 9:109.
Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Juárez K, Núñez C, Reguera G, DiDonato R, Postier B et al..  2009.  Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.. BMC Genomics. 10:331.
Krushkal J, Yan B, DiDonato LN, Puljic M, Nevin KP, Woodard TL, Adkins RM, Methé BA, Lovley DR.  2007.  Genome-wide expression profiling in Geobacter sulfurreducens: identification of Fur and RpoS transcription regulatory sites in a relGsu mutant.. Funct Integr Genomics. 7(3):229-55.
Ueki T, Lovley DR.  2010.  Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.. Nucleic Acids Res. 38(3):810-21.
Yan B, Lovley DR, Krushkal J.  2007.  Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.. Biosystems. 90(2):421-41.
Krushkal J, Juárez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.  2010.  Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.
Butler JE, He Q, Nevin KP, He Z, Zhou J, Lovley DR.  2007.  Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site.. BMC Genomics. 8:180.
Qu Y, Brown P, Barbe JF, Puljic M, Merino E, Adkins RM, Lovley DR, Krushkal J.  2009.  GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens.. OMICS. 13(5):439-49.
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Ueki T, Lovley DR.  2007.  Heat-shock sigma factor RpoH from Geobacter sulfurreducens.. Microbiology. 153(Pt 3):838-46.
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Vriezen JAC, de Bruijn FJ, Nüsslein K.  2013.  Identification and characterization of a NaCl-responsive genetic locus involved in survival during desiccation in Sinorhizobium meliloti.. Appl Environ Microbiol. 79(18):5693-700.
Kovacevic S, Anderson D, Morita YS, Patterson J, Haites R, McMillan BNI, Coppel R, McConville MJ, Billman-Jacobe H.  2006.  Identification of a novel protein with a role in lipoarabinomannan biosynthesis in mycobacteria.. J Biol Chem. 281(14):9011-7.
Holmes DE, Nevin KP, Lovley DR.  2004.  In situ expression of nifD in Geobacteraceae in subsurface sediments.. Appl Environ Microbiol. 70(12):7251-9.
Mahadevan R, Palsson BØ, Lovley DR.  2011.  In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.. Nat Rev Microbiol. 9(1):39-50.
Griffith KL, Grossman AD.  2008.  Inducible protein degradation in Bacillus subtilis using heterologous peptide tags and adaptor proteins to target substrates to the protease ClpXP.. Mol Microbiol. 70(4):1012-25.
Mouser PJ, N'guessan LA, Elifantz H, Holmes DE, Williams KH, Wilkins MJ, Long PE, Lovley DR.  2009.  Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater.. Environ Sci Technol. 43(12):4386-92.
Kim B-C, Postier BL, Didonato RJ, Chaudhuri SK, Nevin KP, Lovley DR.  2008.  Insights into genes involved in electricity generation in Geobacter sulfurreducens via whole genome microarray analysis of the OmcF-deficient mutant.. Bioelectrochemistry. 73(1):70-5.
Kim B-C, Lovley DR.  2008.  Investigation of direct vs. indirect involvement of the c-type cytochrome MacA in Fe(III) reduction by Geobacter sulfurreducens.. FEMS Microbiol Lett. 286(1):39-44.
Magnuson TS, Isoyama N, Hodges-Myerson AL, Davidson G, Maroney MJ, Geesey GG, Lovley DR.  2001.  Isolation, characterization and gene sequence analysis of a membrane-associated 89 kDa Fe(III) reducing cytochrome c from Geobacter sulfurreducens.. Biochem J. 359(Pt 1):147-52.
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Banerjee A, Leang C, Ueki T, Nevin KP, Lovley DR.  2014.  Lactose-inducible system for metabolic engineering of Clostridium ljungdahlii.. Appl Environ Microbiol. 80(8):2410-6.
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Liu F, Rotaru A-E, Shrestha PM, Malvankar NS, Nevin KP, Lovley DR.  2015.  Magnetite compensates for the lack of a pilin-associated c-type cytochrome in extracellular electron exchange.. Environ Microbiol. 17(3):648-55.
McCool JD, Long E, Petrosino JF, Sandler HA, Rosenberg SM, Sandler SJ.  2004.  Measurement of SOS expression in individual Escherichia coli K-12 cells using fluorescence microscopy.. Mol Microbiol. 53(5):1343-57.
Holmes DE, Chaudhuri SK, Nevin KP, Mehta T, Methé BA, Liu A, Ward JE, Woodard TL, Webster J, Lovley DR.  2006.  Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens.. Environ Microbiol. 8(10):1805-15.

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