Publications

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Kashefi K, Tor JM, Holmes DE, Gaw Van Praagh CV, Reysenbach A-L, Lovley DR.  2002.  Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor.. Int J Syst Evol Microbiol. 52(Pt 3):719-28.
Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A-E et al..  2011.  Geobacter: the microbe electric's physiology, ecology, and practical applications.. Adv Microb Physiol. 59:1-100.
Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR.  2007.  Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.
Nevin KP, Holmes DE, Woodard TL, Hinlein ES, Ostendorf DW, Lovley DR.  2005.  Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates.. Int J Syst Evol Microbiol. 55(Pt 4):1667-74.
Holmes DE, Risso C, Smith JA, Lovley DR.  2012.  Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.. ISME J. 6(1):146-57.
Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo JM, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.  2008.  Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.. Microbiology. 154(Pt 5):1422-35.
O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al..  2008.  Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.
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Liang D, Liu X, Woodard TL, Holmes DE, Smith JA, Nevin KP, Feng Y, Lovley DR.  2021.  Extracellular Electron Exchange Capabilities of and .. Environ Sci Technol. 55(23):16195-16203.
Elifantz H, N'guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.  2010.  Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.. FEMS Microbiol Ecol. 73(3):441-9.
Holmes DE, Giloteaux L, Chaurasia AK, Williams KH, Luef B, Wilkins MJ, Wrighton KC, Thompson CA, Comolli LR, Lovley DR.  2015.  Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.. ISME J. 9(2):333-46.
Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR.  2013.  Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.. ISME J. 7(7):1286-98.
Holmes DE, Finneran KT, O'Neil RA, Lovley DR.  2002.  Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments.. Appl Environ Microbiol. 68(5):2300-6.
Dang Y, Holmes DE, Zhao Z, Woodard TL, Zhang Y, Sun D, Wang L-Y, Nevin KP, Lovley DR.  2016.  Enhancing anaerobic digestion of complex organic waste with carbon-based conductive materials.. Bioresour Technol. 220:516-522.
Holmes DE, Bond DR, Lovley DR.  2004.  Electron transfer by Desulfobulbus propionicus to Fe(III) and graphite electrodes.. Appl Environ Microbiol. 70(2):1234-7.
Holmes DE, Rotaru A-E, Ueki T, Shrestha PM, Ferry JG, Lovley DR.  2018.  Electron and Proton Flux for Carbon Dioxide Reduction in During Direct Interspecies Electron Transfer.. Front Microbiol. 9:3109.
Lovley DR, Holmes DE.  2022.  Electromicrobiology: the ecophysiology of phylogenetically diverse electroactive microorganisms.. Nat Rev Microbiol. 20(1):5-19.
Bond DR, Holmes DE, Tender LM, Lovley DR.  2002.  Electrode-reducing microorganisms that harvest energy from marine sediments.. Science. 295(5554):483-5.
Holmes DE, Dang Y, Walker DJF, Lovley DR.  2016.  The electrically conductive pili of pecies are a recently evolved feature for extracellular electron transfer.. Microb Genom. 2(8):e000072.
Walker DJf, Adhikari RY, Holmes DE, Ward JE, Woodard TL, Nevin KP, Lovley DR.  2018.  Electrically conductive pili from pilin genes of phylogenetically diverse microorganisms.. ISME J. 12(1):48-58.

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