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Holmes DE, Giloteaux L, Orellana R, Williams KH, Robbins MJ, Lovley DR.  2014.  Methane production from protozoan endosymbionts following stimulation of microbial metabolism within subsurface sediments.. Front Microbiol. 5:366.
Holmes DE, Bond DR, O'Neil RA, Reimers CE, Tender LR, Lovley DR.  2004.  Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments.. Microb Ecol. 48(2):178-90.
Oremland RS, Lonergan DJ, Culbertson CW, Lovley DR.  1996.  Microbial degradation of hydrochlorofluorocarbons (CHCl2F and CHCl2CF3) in soils and sediments.. Appl Environ Microbiol. 62(5):1818-21.
Chang Y-J, Long PE, Geyer R, Peacock AD, Resch CT, Sublette K, Pfiffner S, Smithgall A, Anderson RT, Vrionis HA et al..  2005.  Microbial incorporation of 13C-labeled acetate at the field scale: detection of microbes responsible for reduction of U(VI).. Environ Sci Technol. 39(23):9039-48.
Vrionis HA, Anderson RT, Ortiz-Bernad I, O'Neill KR, Resch CT, Peacock AD, Dayvault R, White DC, Long PE, Lovley DR.  2005.  Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site.. Appl Environ Microbiol. 71(10):6308-18.
Vrionis HA, Anderson RT, Ortiz-Bernad I, O'Neill KR, Resch CT, Peacock AD, Dayvault R, White DC, Long PE, Lovley DR.  2005.  Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site.. Appl Environ Microbiol. 71(10):6308-18.
O
Hatzios SK, Baer CE, Rustad TR, M Siegrist S, Pang JM, Ortega C, Alber T, Grundner C, Sherman DR, Bertozzi CR.  2013.  Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase.. Proc Natl Acad Sci U S A. 110(52):E5069-77.
P
Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al..  2011.  PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.
Juárez K, Kim B-C, Nevin K, Olvera L, Reguera G, Lovley DR, Methé BA.  2009.  PilR, a transcriptional regulator for pilin and other genes required for Fe(III) reduction in Geobacter sulfurreducens.. J Mol Microbiol Biotechnol. 16(3-4):146-58.
Holmes DE, Orelana R, Giloteaux L, Wang L-Y, Shrestha P, Williams K, Lovley DR, Rotaru A-E.  2018.  Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation.. Microb Ecol. 76(3):660-667.
Holmes DE, Nevin KP, O'Neil RA, Ward JE, Adams LA, Woodard TL, Vrionis HA, Lovley DR.  2005.  Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes.. Appl Environ Microbiol. 71(11):6870-7.
Nevin KP, Richter H, Covalla SF, Johnson JP, Woodard TL, Orloff AL, Jia H, Zhang M, Lovley DR.  2008.  Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells.. Environ Microbiol. 10(10):2505-14.
Mukherjee J, Chios K, Fishwild D, Hudson D, O'Donnell S, Rich SM, Donohue-Rolfe A, Tzipori S.  2002.  Production and characterization of protective human antibodies against Shiga toxin 1.. Infect Immun. 70(10):5896-9.
Oslowski DM, Jung J-H, Seo D-H, Park C-S, Holden JF.  2011.  Production of hydrogen from α-1,4- and β-1,4-linked saccharides by marine hyperthermophilic Archaea.. Appl Environ Microbiol. 77(10):3169-73.
Orellana R, Hixson KK, Murphy S, Mester T, Sharma ML, Lipton MS, Lovley DR.  2014.  Proteome of Geobacter sulfurreducens in the presence of U(VI).. Microbiology (Reading). 160(Pt 12):2607-2617.
Prilusky J, Hodis E, Canner D, Decatur WA, Oberholser K, Martz E, Berchanski A, Harel M, Sussman JL.  2011.  Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.. J Struct Biol. 175(2):244-52.
Q
Chin K-J, Sharma ML, Russell LA, O'Neill KR, Lovley DR.  2008.  Quantifying expression of a dissimilatory (bi)sulfite reductase gene in petroleum-contaminated marine harbor sediments.. Microb Ecol. 55(3):489-99.
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Chapelle FH, Bradley PM, Lovley DR, O'Neill K, Landmeyer JE.  2002.  Rapid evolution of redox processes in a petroleum hydrocarbon-contaminated aquifer.. Ground Water. 40(4):353-60.
Ortiz-Bernad I, Anderson RT, Vrionis HA, Lovley DR.  2004.  Resistance of solid-phase U(VI) to microbial reduction during in situ bioremediation of uranium-contaminated groundwater.. Appl Environ Microbiol. 70(12):7558-60.
S
Anderson RT, Vrionis HA, Ortiz-Bernad I, Resch CT, Long PE, Dayvault R, Karp K, Marutzky S, Metzler DR, Peacock A et al..  2003.  Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer.. Appl Environ Microbiol. 69(10):5884-91.
Meniche X, Otten R, M Siegrist S, Baer CE, Murphy KC, Bertozzi CR, Sassetti CM.  2014.  Subpolar addition of new cell wall is directed by DivIVA in mycobacteria.. Proc Natl Acad Sci U S A. 111(31):E3243-51.
Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al..  2007.  Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.
Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al..  2007.  Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.
Stolz JF, Ellis DJ, Blum JS, Ahmann D, Lovley DR, Oremland RS.  1999.  Sulfurospirillum barnesii sp. nov. and Sulfurospirillum arsenophilum sp. nov., new members of the Sulfurospirillum clade of the epsilon Proteobacteria.. Int J Syst Bacteriol. 49 Pt 3:1177-80.
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Hong Y, Nagamune K, Ohishi K, Morita YS, Ashida H, Maeda Y, Kinoshita T.  2006.  TbGPI16 is an essential component of GPI transamidase in Trypanosoma brucei.. FEBS Lett. 580(2):603-6.

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