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Fang B, Jiang Y, Nüsslein K, Rotello VM, Santore MM.  2015.  Antimicrobial surfaces containing cationic nanoparticles: how immobilized, clustered, and protruding cationic charge presentation affects killing activity and kinetics.. Colloids Surf B Biointerfaces. 125:255-63.
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Esteve-Núñez A, Núñez C, Lovley DR.  2004.  Preferential reduction of FeIII over fumarate by Geobacter sulfurreducens.. J Bacteriol. 186(9):2897-9.
Esteve-Núñez A, Sosnik J, Visconti P, Lovley DR.  2008.  Fluorescent properties of c-type cytochromes reveal their potential role as an extracytoplasmic electron sink in Geobacter sulfurreducens.. Environ Microbiol. 10(2):497-505.
Elkhaimi M, Kaadige MR, Kamath D, Jackson JC, Biliran H, Lopes JM.  2000.  Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3 and RPD3 genes.. Nucleic Acids Res. 28(16):3160-7.
Elifantz H, N'guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.  2010.  Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.. FEMS Microbiol Ecol. 73(3):441-9.
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Duval B, Goodwin S.  2000.  Methane production and release from two New England peatlands.. Int Microbiol. 3(2):89-95.
Duran E, Komuniecki RW, Komuniecki PR, Wheelock MJ, Klingbeil MM, Ma YC, Johnson KR.  1993.  Characterization of cDNA clones for the 2-methyl branched-chain enoyl-CoA reductase. An enzyme involved in branched-chain fatty acid synthesis in anaerobic mitochondria of the parasitic nematode Ascaris suum.. J Biol Chem. 268(30):22391-6.
Ding Y-HR, Hixson KK, Aklujkar MA, Lipton MS, Smith RD, Lovley DR, Mester T.  2008.  Proteome of Geobacter sulfurreducens grown with Fe(III) oxide or Fe(III) citrate as the electron acceptor.. Biochim Biophys Acta. 1784(12):1935-41.
Ding Y-HR, Hixson KK, Giometti CS, Stanley A, Esteve-Núñez A, Khare T, Tollaksen SL, Zhu W, Adkins JN, Lipton MS et al..  2006.  The proteome of dissimilatory metal-reducing microorganism Geobacter sulfurreducens under various growth conditions.. Biochim Biophys Acta. 1764(7):1198-206.
DiDonato LN, Sullivan SA, Methé BA, Nevin KP, England R, Lovley DR.  2006.  Role of RelGsu in stress response and Fe(III) reduction in Geobacter sulfurreducens.. J Bacteriol. 188(24):8469-78.
Diao Y, Rodriguez V, Klingbeil M, Arsuaga J.  2015.  Orientation of DNA Minicircles Balances Density and Topological Complexity in Kinetoplast DNA.. PLoS One. 10(6):e0130998.
Deangelis KM, Firestone MK.  2012.  Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.. Appl Environ Microbiol. 78(7):2459-61.
Deangelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK.  2009.  Selective progressive response of soil microbial community to wild oat roots.. ISME J. 3(2):168-78.
Deangelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME et al..  2011.  PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip.. Appl Environ Microbiol. 77(18):6313-22.
DeAngelis KM, Chivian D, Fortney J, Simmons BA, Hazen TC, Silver WL.  2013.  Changes in microbial dynamics during long-term decomposition in tropical forests.. Soil Biology and Biochemistry. 66:60-68.
Deangelis KM, D'haeseleer P, Chivian D, Simmons B, Arkin AP, Mavromatis K, Malfatti S, Tringe S, Hazen TC.  2013.  Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.. Stand Genomic Sci. 7(3):382-98.
Deangelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC.  2012.  Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia.. MBio. 3(1)
DeAngelis KM, Pold G, Topcuoglu B, van Diepen L, Blanchard J, Melillo J, Frey S.  2015.  Long-term warming drives loss of dominant taxa and rRNA copy number among soil bacteria.. Frontiers in Microbiology.
Deangelis KM, Silver WL, Thompson AW, Firestone MK.  2010.  Microbial communities acclimate to recurring changes in soil redox potential status.. Environ Microbiol. 12(12):3137-49.
Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al..  2011.  Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.
Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC.  2011.  Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.
Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LM, Nicora C, Norbeck AD, Taylor RC, Aldrich JT et al..  2013.  Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.. Front Microbiol. 4:280.
de la Salmonière Y-OLuc Goguet, Kim CC, Tsolaki AG, Pym AS, Siegrist MS, Small PM.  2004.  High-throughput method for detecting genomic-deletion polymorphisms.. J Clin Microbiol. 42(7):2913-8.
Daniels R, Rusan NM, Wilbuer A-K, Norkin LC, Wadsworth P, Hebert DN.  2006.  Simian virus 40 late proteins possess lytic properties that render them capable of permeabilizing cellular membranes.. J Virol. 80(13):6575-87.
Dangoria NS, Breau WC, Anderson HA, Cishek DM, Norkin LC.  1996.  Extracellular simian virus 40 induces an ERK/MAP kinase-independent signalling pathway that activates primary response genes and promotes virus entry.. J Gen Virol. 77 ( Pt 9):2173-82.

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