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Holmes DE, Bond DR, O'Neil RA, Reimers CE, Tender LR, Lovley DR.  2004.  Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments.. Microb Ecol. 48(2):178-90.
Holmes DE, Giloteaux L, Chaurasia AK, Williams KH, Luef B, Wilkins MJ, Wrighton KC, Thompson CA, Comolli LR, Lovley DR.  2015.  Evidence of Geobacter-associated phage in a uranium-contaminated aquifer.. ISME J. 9(2):333-46.
Holmes DE, Zhou J, Ueki T, Woodard T, Lovley DR.  2021.  Mechanisms for Electron Uptake by Methanosarcina acetivorans during Direct Interspecies Electron Transfer.. mBio. 12(5):e0234421.
Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR.  2009.  Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.
Holmes DE, Ueki T, Tang H-Y, Zhou J, Smith JA, Chaput G, Lovley DR.  2019.  A Membrane-Bound Cytochrome Enables To Conserve Energy from Extracellular Electron Transfer.. mBio. 10(4)
Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.  2013.  Molecular analysis of the in situ growth rates of subsurface Geobacter species.. Appl Environ Microbiol. 79(5):1646-53.
Holmes DE, Shrestha PM, Walker DJF, Dang Y, Nevin KP, Woodard TL, Lovley DR.  2017.  Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy Soils.. Appl Environ Microbiol. 83(9)
Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al..  2007.  Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.
Holmes DE, Nevin KP, Lovley DR.  2004.  In situ expression of nifD in Geobacteraceae in subsurface sediments.. Appl Environ Microbiol. 70(12):7251-9.
Holmes DE, Giloteaux L, Orellana R, Williams KH, Robbins MJ, Lovley DR.  2014.  Methane production from protozoan endosymbionts following stimulation of microbial metabolism within subsurface sediments.. Front Microbiol. 5:366.
Holmes DE, Nevin KP, O'Neil RA, Ward JE, Adams LA, Woodard TL, Vrionis HA, Lovley DR.  2005.  Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes.. Appl Environ Microbiol. 71(11):6870-7.
Holden JF, Takai K, Summit M, Bolton S, Zyskowski J, Baross JA.  2001.  Diversity among three novel groups of hyperthermophilic deep-sea Thermococcus species from three sites in the northeastern Pacific Ocean.. FEMS Microbiol Ecol. 36(1):51-60.
Holden JF, Baross JA.  1993.  Enhanced thermotolerance and temperature-induced changes in protein composition in the hyperthermophilic archaeon ES4.. J Bacteriol. 175(10):2839-43.
Holden JF, Adams MWW.  2003.  Microbe-metal interactions in marine hydrothermal environments.. Curr Opin Chem Biol. 7(2):160-5.
Holden JF, Poole Ii FL, Tollaksen SL, Giometti CS, Lim H, Yates Iii JR, Adams MW.  2001.  Identification of membrane proteins in the hyperthermophilic archaeon pyrococcus furiosus using proteomics and prediction programs.. Comp Funct Genomics. 2(5):275-88.
Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL.  2008.  Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules.. Genome Biol. 9(8):R121.
Hinds T, Sandler SJ.  2004.  Allele specific synthetic lethality between priC and dnaAts alleles at the permissive temperature of 30 degrees C in E. coli K-12.. BMC Microbiol. 4:47.
Hensley SA, Jung J-H, Park C-S, Holden JF.  2014.  Thermococcus paralvinellae sp. nov. and Thermococcus cleftensis sp. nov. of hyperthermophilic heterotrophs from deep-sea hydrothermal vents.. Int J Syst Evol Microbiol. 64(Pt 11):3655-9.
Hensley SA, Moreira E, Holden JF.  2016.  Hydrogen Production and Enzyme Activities in the Hyperthermophile Thermococcus paralvinellae Grown on Maltose, Tryptone, and Agricultural Waste.. Front Microbiol. 7:167.
Hendrickson WA, Ward KB.  1975.  Atomic models for the polypeptide backbones of myohemerythrin and hemerythrin.. Biochem Biophys Res Commun. 66(4):1349-56.
Hegde S, Sandler SJ, Clark AJ, Madiraju MV.  1995.  recO and recR mutations delay induction of the SOS response in Escherichia coli.. Mol Gen Genet. 246(2):254-8.
Hedrick DB, Peacock AD, Lovley DR, Woodard TL, Nevin KP, Long PE, White DC.  2009.  Polar lipid fatty acids, LPS-hydroxy fatty acids, and respiratory quinones of three Geobacter strains, and variation with electron acceptor.. J Ind Microbiol Biotechnol. 36(2):205-9.
He Y, Swaminathan A, Lopes JM.  2012.  Transcription regulation of the Saccharomyces cerevisiae PHO5 gene by the Ino2p and Ino4p basic helix-loop-helix proteins.. Mol Microbiol. 83(2):395-407.
Hayes LA, Lovley DR.  2002.  Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments.. Microb Ecol. 43(1):134-45.
Hayashi JM, Richardson K, Melzer ES, Sandler SJ, Aldridge BB, M. Siegrist S, Morita YS.  2018.  Stress-Induced Reorganization of the Mycobacterial Membrane Domain. {mBio}. 9

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