Publications

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2010
Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR et al..  2010.  De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads.. PLoS One. 5(6):e10922.
Summers ZM, Fogarty HE, Leang C, Franks AE, Malvankar NS, Lovley DR.  2010.  Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria.. Science. 330(6009):1413-5.
Williams KH, Nevin KP, Franks A, Englert A, Long PE, Lovley DR.  2010.  Electrode-based approach for monitoring in situ microbial activity during subsurface bioremediation.. Environ Sci Technol. 44(1):47-54.
Butler JE, Young ND, Lovley DR.  2010.  Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.. BMC Genomics. 11:40.
Elifantz H, N'guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.  2010.  Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.. FEMS Microbiol Ecol. 73(3):441-9.
Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR.  2010.  The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.. BMC Genomics. 11:490.
Ueki T, Lovley DR.  2010.  Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.. Nucleic Acids Res. 38(3):810-21.
Krushkal J, Juárez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.  2010.  Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.
Aklujkar M, Lovley DR.  2010.  Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus.. BMC Evol Biol. 10:230.
Yang T H, Coppi MV, Lovley DR, Sun J.  2010.  Metabolic response of Geobacter sulfurreducens towards electron donor/acceptor variation.. Microb Cell Fact. 9:90.
Nevin KP, Woodard TL, Franks AE, Summers ZM, Lovley DR.  2010.  Microbial electrosynthesis: feeding microbes electricity to convert carbon dioxide and water to multicarbon extracellular organic compounds.. MBio. 1(2)
Franks AE, Nevin KP, Glaven RH, Lovley DR.  2010.  Microtoming coupled to microarray analysis to evaluate the spatial metabolic status of Geobacter sulfurreducens biofilms.. ISME J. 4(4):509-19.
Zhao J, Fang Y, Scheibe TD, Lovley DR, Mahadevan R.  2010.  Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments.. J Contam Hydrol. 112(1-4):30-44.
N'guessan LA, Elifantz H, Nevin KP, Mouser PJ, Methé B, Woodard TL, Manley K, Williams KH, Wilkins MJ, Larsen JT et al..  2010.  Molecular analysis of phosphate limitation in Geobacteraceae during the bioremediation of a uranium-contaminated aquifer.. ISME J. 4(2):253-66.
Ueki T, Lovley DR.  2010.  Novel regulatory cascades controlling expression of nitrogen-fixation genes in Geobacter sulfurreducens.. Nucleic Acids Res. 38(21):7485-99.
Klimes A, Franks AE, Glaven RH, Tran H, Barrett CL, Qiu Y, Zengler K, Lovley DR.  2010.  Production of pilus-like filaments in Geobacter sulfurreducens in the absence of the type IV pilin protein PilA.. FEMS Microbiol Lett. 310(1):62-8.
Inoue K, Qian X, Morgado L, Kim B-C, Mester T, Izallalen M, Salgueiro CA, Lovley DR.  2010.  Purification and characterization of OmcZ, an outer-surface, octaheme c-type cytochrome essential for optimal current production by Geobacter sulfurreducens.. Appl Environ Microbiol. 76(12):3999-4007.
Voordeckers JW, Kim B-C, Izallalen M, Lovley DR.  2010.  Role of Geobacter sulfurreducens outer surface c-type cytochromes in reduction of soil humic acid and anthraquinone-2,6-disulfonate.. Appl Environ Microbiol. 76(7):2371-5.
Zhang T, Gannon SM, Nevin KP, Franks AE, Lovley DR.  2010.  Stimulating the anaerobic degradation of aromatic hydrocarbons in contaminated sediments by providing an electrode as the electron acceptor.. Environ Microbiol. 12(4):1011-20.
2011
Holmes DE, Risso C, Smith JA, Lovley DR.  2011.  Anaerobic oxidation of benzene by the hyperthermophilic archaeon Ferroglobus placidus.. Appl Environ Microbiol. 77(17):5926-33.
Qian X, Mester T, Morgado L, Arakawa T, Sharma ML, Inoue K, Joseph C, Salgueiro CA, Maroney MJ, Lovley DR.  2011.  Biochemical characterization of purified OmcS, a c-type cytochrome required for insoluble Fe(III) reduction in Geobacter sulfurreducens.. Biochim Biophys Acta. 1807(4):404-12.
Tremblay P-L, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR.  2011.  A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.
Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS.  2011.  Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).. Microb Biotechnol. 4(1):55-63.
Fang Y, Scheibe TD, Mahadevan R, Garg S, Long PE, Lovley DR.  2011.  Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model.. J Contam Hydrol. 122(1-4):96-103.
Nevin KP, Hensley SA, Franks AE, Summers ZM, Ou J, Woodard TL, Snoeyenbos-West OL, Lovley DR.  2011.  Electrosynthesis of organic compounds from carbon dioxide is catalyzed by a diversity of acetogenic microorganisms.. Appl Environ Microbiol. 77(9):2882-6.

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