Publications

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2013
Shrestha PMalla, Rotaru A-E, Summers ZM, Shrestha M, Liu F, Lovley DR.  2013.  Transcriptomic and genetic analysis of direct interspecies electron transfer.. Appl Environ Microbiol. 79(7):2397-404.
Shrestha PMalla, Rotaru A-E, Summers ZM, Shrestha M, Liu F, Lovley DR.  2013.  Transcriptomic and genetic analysis of direct interspecies electron transfer.. Appl Environ Microbiol. 79(7):2397-404.
Benmerzouga I, Concepción-Acevedo J, Kim H-S, Vandoros AV, Cross GAM, Klingbeil MM, Li B.  2013.  Trypanosoma brucei Orc1 is essential for nuclear DNA replication and affects both VSG silencing and VSG switching.. Mol Microbiol. 87(1):196-210.
Orellana R, Leavitt JJ, Comolli LR, Csencsits R, Janot N, Flanagan KA, Gray AS, Leang C, Izallalen M, Mester T et al..  2013.  U(VI) reduction by diverse outer surface c-type cytochromes of Geobacter sulfurreducens.. Appl Environ Microbiol. 79(20):6369-74.
Orellana R, Leavitt JJ, Comolli LR, Csencsits R, Janot N, Flanagan KA, Gray AS, Leang C, Izallalen M, Mester T et al..  2013.  U(VI) reduction by diverse outer surface c-type cytochromes of Geobacter sulfurreducens.. Appl Environ Microbiol. 79(20):6369-74.
Orellana R, Leavitt JJ, Comolli LR, Csencsits R, Janot N, Flanagan KA, Gray AS, Leang C, Izallalen M, Mester T et al..  2013.  U(VI) reduction by diverse outer surface c-type cytochromes of Geobacter sulfurreducens.. Appl Environ Microbiol. 79(20):6369-74.
Shrestha PMalla, Nevin KP, Shrestha M, Lovley DR.  2013.  When is a microbial culture "pure"? Persistent cryptic contaminant escapes detection even with deep genome sequencing. mBio. 4(2):e00591-12.
2012
Zhang T, Bain TS, Nevin KP, Barlett MA, Lovley DR.  2012.  Anaerobic benzene oxidation by Geobacter species.. Appl Environ Microbiol. 78(23):8304-10.
Burand JP, Kim W, Afonso CL, Tulman ER, Kutish GF, Lu Z, Rock DL.  2012.  Analysis of the genome of the sexually transmitted insect virus Helicoverpa zea nudivirus 2.. Viruses. 4(1):28-61.
Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al..  2012.  Comparative analysis of virus–host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349–359.
Butler JE, Young ND, Aklujkar M, Lovley DR.  2012.  Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.. BMC Genomics. 13:471.
Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.
Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.
Zhuang K, Ma E, Lovley DR, Mahadevan R.  2012.  The design of long-term effective uranium bioremediation strategy using a community metabolic model.. Biotechnol Bioeng. 109(10):2475-83.
Concepción-Acevedo J, Luo J, Klingbeil MM.  2012.  Dynamic localization of Trypanosoma brucei mitochondrial DNA polymerase ID.. Eukaryot Cell. 11(7):844-55.
Malvankar NS, Lau J, Nevin KP, Franks AE, Tuominen MT, Lovley DR.  2012.  Electrical conductivity in a mixed-species biofilm.. Appl Environ Microbiol. 78(16):5967-71.
Malvankar NS, Lau J, Nevin KP, Franks AE, Tuominen MT, Lovley DR.  2012.  Electrical conductivity in a mixed-species biofilm.. Appl Environ Microbiol. 78(16):5967-71.
Lovley DR.  2012.  Electromicrobiology.. Annu Rev Microbiol.
Massoni SC, Leeson MC, Long J E, Gemme K, Mui A, Sandler SJ.  2012.  Factors Limiting SOS Expression in Log-Phase Cells of Escherichia coli.. J Bacteriol. 194(19):5325-33.
Massoni SC, Leeson MC, Long J E, Gemme K, Mui A, Sandler SJ.  2012.  Factors Limiting SOS Expression in Log-Phase Cells of Escherichia coli.. J Bacteriol. 194(19):5325-33.
Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.  2012.  The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.
Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.  2012.  The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.
Holmes DE, Risso C, Smith JA, Lovley DR.  2012.  Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.. ISME J. 6(1):146-57.
Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP.  2012.  Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.. Proc Natl Acad Sci U S A. 109(32):E2173-82.
Ver Eecke HC, Butterfield DA, Huber JA, Lilley MD, Olson EJ, Roe KK, Evans LJ, Merkel AY, Cantin HV, Holden JF.  2012.  Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents.. Proc Natl Acad Sci U S A. 109(34):13674-9.

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