Publications

Google Scholar page for Kristen DeAngeils

Grace Pold+, Stuart Grandy, Jerry Melillo, Kristen M DeAngelis* (2017) “Changes in substrate availability drive carbon cycle response to chronic warming.” Soil Biology and Biochemistry, in press

Grace Pold+, Andrew F. Billings+, Jeff L. Blanchard, Daniel B. Burkhardt+, Serita D. Frey, Jerry M. Melillo, Julia Schnabel+, Linda T. A. van Diepen, Kristen M. DeAngelis* (2016) “Long-term warming alters carbohydrate degradation potential in temperate forest soils.” Applied and Environmental Microbiology HTML

Billings, A+, JL Fortney, TC Hazen, B Simmons, KW Davenport, L Goodwin, N Ivanova, NC Kyrpides, K Mavromatis, T Woyke, KM DeAngelis*. (2015) “Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolyticus sp. nov.” Standards in Genomic Sciences, 10:106 HTML-OA

Pold, G+, J Melillo, KM DeAngelis*. (2015) “Two decades of warming increases diversity of a potentially lignolytic bacterial community.” Frontiers in Microbiology 6:480 HTML-OA

DeAngelis, KM*, G Pold+, B Topcuoglu+, L van Diepen, J Blanchard, J Melillo, S Frey. (2015) “Long-term forest soil warming alters microbial communities in temperate forest soils.” Frontiers in Microbiology. HTML-OA

Woo, HL+, N Ballor, TC Hazen, JL Fortney, BA Simmons, KW Davenport, L Goodwin, N Ivanova, NC Kyrpides, KMavromatis, T Woyke, KM DeAngelis*. (2014) “Complete genome sequence of Klebsiella lignolyticus BRL6-2.” Standards in Genome Sciences.

Woo, Hannah L, Sagar Utturkar, Dawn Klingeman, Blake Simmons, Kristen DeAngelis, Steven Brown, and Terry Hazen. (2014) "Draft Genome Sequence of the Lignin-degrading Burkholderia sp. str. LIG30, Isolated from Wet Tropical Forest Soil." ASM Genome Announcements.

Pold, G+ & KM DeAngelis* (2013) “Up against the wall: the effects of climate warming on soil microbial diversity and the potential for feedbacks to the carbon cycle.” Diversity v5(2), 409-425 HTML-OA

Woo, HL+, BA Simmons, TC Hazen, KM DeAngelis*. (2013) “Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils.” Systematic and Applied Microbiology. 37(1):60-67 HTML, PDF

DeAngelis KM*, D Sharma+, R Varney, BA Simmons, N Isern, LM Markillie, C Nicora, AD Norbeck, RC Taylor, JT Aldrich, EW Robinson (2013) Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1. Frontiers in Microbiology. 4:280. HTML-OA

DeAngelis, KM* (2013) “Rhizosphere microbial communication as mediation for plant nutrient acquisition. In Molecular Microbial Ecology of the Rhizosphere.” Frans J. de Bruijn, ed. Wiley Blackwell, Inc., Hoboken NJ, USA. PDF

DeAngelis KM*, D Chivian, J Fortney, BA Simmons, TC Hazen, WL Silver (2013) “Changes in microbial dynamics during long-term decomposition in tropical forests.” Soil Biology and Biochemistry. 66: 60-68 HTML, PDF

DeAngelis, KM*, P D’haeseleer, D Chivian, B Simmons, AP Arkin, K Mavromatis, S Malfatti, S Tringe, TC Hazen (2013) “Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.” Standards in Genome Sciences. 7: 382-398 HTML-OA

DeAngelis, KM*, MK Firestone (2012) “Differences in phylogenetic clustering of soil microbial communities observed less by 16S rRNA genes than their transcripts.” Applied and Environmental Microbiology, 78(7):2459-61. HTML, PDF

DeAngelis, KM,* JL Fortney, S Borglin, WL Silver, B Simmons, TC Hazen (2012) “Anaerobic decomposition of switchgrass by tropical soil-derived feedstock adapted consortia.” mBio, Feb 21;3(1):e00249-311. HTML-OA, PDF

Khudyakov J, P D’haeseleer, SE Borglin, KM DeAngelis, H Woo, EA Lindquist, TC Hazen, BA Simmons, MP Thelen* (2012) “Global transcriptome response to ionic liquid of a tropical rain forest soil bacterium, Enterobacter lignolyticus SCF1.” Proceedings of the National Academy of Sciences USA, 109(32):E2173-82. HTML-OA, PDF

Borglin SE, D Joyner, Khudyakov J, P D’haeseleer, KM DeAngelis, TC Hazen* (2012) “Application of phenotypic microarrays to environmental microbiology.” Current Opinions in Biotechnology v23: 41-48 HTML-OA, PDF

DeAngelis, KM*, P D’haeseleer, D Chivian, JL Fortney, J Khudyakov, BA Simmons, HW Woo, AP Arkin, KW Davenport, L Goodwin, A Chen, N Ivanova, NC Kyrpides, K Mavromatis, T Woyke, TC Hazen (2011) “Complete genome sequence of Enterobacter lignolyticus SCF1.” Standards in Genome Sciences. 5:69-85. HTML-OA, PDF

Mackelprang, R, MP Waldrop, KM DeAngelis, MM David, KL Chavaria, SJ Blazewicz, E Rubin, J Jansson* (2011) “Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.” Nature, 6;480(7377): 368-71. HTML, PDF

DeAngelis, KM, CH Wu, HR Beller, EL Brodie, R Chakraborty, TZ DeSantis, JL Fortney, TC Hazen, SR Osman, ME Singer, LM Tom, GL Andersen* (2011) “PCR-amplification independent methods for detection of microbial communities by high-density microarray PhyloChip.” Applied and Environmental Microbiology, 77(18): 6313-6322. HTML-OA, PDF

Shi, S, LM Condron*, M O’Callaghan, AE Richardson, KM DeAngelis, EE Jones, A Stewart, MK Firestone (2011) “Effects of selected root exudates components on soil microbial communities.” FEMS Microbiology Ecology, 77(3): 600-610. HTML-OA

DeAngelis, KM*, M Allgaier, Y Chavarria, J Fortney, P Hugenholz, WL Silver, B Simmons, TC Hazen (2011) “Characterization of trapped lignin-degrading microbes in tropical forest soil.” PLoS ONE 6(4): e19306. HTML-OA, PDF

DeAngelis KM*, W Silver, AW Thompson, MK Firestone (2010) “Microbial communities acclimate to recurring changes in soil redox potential status.” Environmental Microbiology 12(12): 3137-3149. HTML, PDF

DeAngelis, KM, JG Gladden, M Allgaier, P D’Haeseleer, JL Fortney, A Reddy, P Hugenholtz, S Singer, J Van Der Gheynst, WL Silver, B Simmons, and TC Hazen* (2010) “Strategies for Targeted Enzyme Discovery from lignocellulytic microbial communities using enrichment and metagenomics.” BioEnergy Research 3:146-158. HTML-OA, PDF

Sagaram, US, KM DeAngelis, P Trivedi, GL.Andersen, S Lu, N Wang* (2009) “Bacterial diversity analysis of citrus leaves from HLB pathogen infected citrus groves using PhyloChips and 16S rDNA clone library sequencing.” Applied and Environmental Microbiology, 75(6): 1566-1574. HTML-OA, PDF

DeAngelis KM, EL Brodie, TZ DeSantis, GL Andersen, Lindow SE and Firestone MK* (2009) “Selective, progressive response of soil microbial community to wild oat roots.” ISME Journal (3):168-178. HTML-OA, PDF

Templer P, Pett-Ridge J, DeAngelis KM, Firestone MK, Silver W* (2008) “Plant and microbial controls on nitrogen retention and loss in Puerto Rican forest soils.” Ecology, 89(11): 3030-3040. PDF

DeAngelis KM, Lindow SE and Firestone MK* (2008) “Bacterial quorum sensing and nitrogen cycling in rhizosphere soil.” FEMS Microbiology Ecology, v66:197-207. HTML-OA, PDF

DeAngelis KM, Firestone MK and Lindow SE* (2007) “Sensitive whole-cell biosensor suitable for detecting a variety of N-acyl homoserine lactones in intact rhizosphere microbial communities.” Applied and Environmental Microbiology, v73(11): 3724-3727. HTML-OA, PDF

Hawkes CV, DeAngelis KM, and Firestone MK* (2007) “Root Interactions with Microbial Communities and Processes.” In The Rhizosphere: an Ecological Perspective. Julie L. Whitbeck and Zoe Cardon, eds. Academic Press, Inc., San Diego CA, USA.

DeAngelis KM, Ji P, Firestone MK, Lindow SE* (2005) “Two Novel Bacterial Biosensors for the Detection of Nitrate Availability in the Rhizosphere.” Applied and Environmental Microbiology, vol 71 (12): 8537-8547 HTML-OA, PDF

+student mentored by DeAngelis, *corresponding author