Publications

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2002

Bond DR, Holmes DE, Tender LM, Lovley DR. 2002. Electrode-reducing microorganisms that harvest energy from marine sediments.. Science. 295(5554):483-5.

Holmes DE, Finneran KT, O'Neil RA, Lovley DR. 2002. Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments.. Appl Environ Microbiol. 68(5):2300-6.

Kashefi K, Tor JM, Holmes DE, Gaw Van Praagh CV, Reysenbach A-L, Lovley DR. 2002. Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor.. Int J Syst Evol Microbiol. 52(Pt 3):719-28.

Tender LM, Reimers CE, Stecher HA, Holmes DE, Bond DR, Lowy DA, Pilobello K, Fertig SJ, Lovley DR. 2002. Harnessing microbially generated power on the seafloor.. Nat Biotechnol. 20(8):821-5.

Kashefi K, Holmes DE, Reysenbach A-L, Lovley DR. 2002. Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov.. Appl Environ Microbiol. 68(4):1735-42.

2003

Kashefi K, Holmes DE, Baross JA, Lovley DR. 2003. Thermophily in the Geobacteraceae: Geothermobacter ehrlichii gen. nov., sp. nov., a novel thermophilic member of the Geobacteraceae from the "Bag City" hydrothermal vent.. Appl Environ Microbiol. 69(5):2985-93.

2004

Holmes DE, Nevin KP, Lovley DR. 2004. Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.

Lovley DR, Holmes DE, Nevin KP. 2004. Dissimilatory Fe(III) and Mn(IV) reduction.. Adv Microb Physiol. 49:219-86.

Holmes DE, Bond DR, Lovley DR. 2004. Electron transfer by Desulfobulbus propionicus to Fe(III) and graphite electrodes.. Appl Environ Microbiol. 70(2):1234-7.

Holmes DE, Nevin KP, Lovley DR. 2004. In situ expression of nifD in Geobacteraceae in subsurface sediments.. Appl Environ Microbiol. 70(12):7251-9.

Holmes DE, Nicoll JS, Bond DR, Lovley DR. 2004. Potential role of a novel psychrotolerant member of the family Geobacteraceae, Geopsychrobacter electrodiphilus gen. nov., sp. nov., in electricity production by a marine sediment fuel cell.. Appl Environ Microbiol. 70(10):6023-30.

2005

Nevin KP, Holmes DE, Woodard TL, Hinlein ES, Ostendorf DW, Lovley DR. 2005. Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates.. Int J Syst Evol Microbiol. 55(Pt 4):1667-74.

Holmes DE, Nevin KP, O'Neil RA, Ward JE, Adams LA, Woodard TL, Vrionis HA, Lovley DR. 2005. Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes.. Appl Environ Microbiol. 71(11):6870-7.

2006

Haveman SA, Holmes DE, Ding Y-HR, Ward JE, Didonato RJ, Lovley DR. 2006. c-Type cytochromes in Pelobacter carbinolicus.. Appl Environ Microbiol. 72(11):6980-5.

Holmes DE, Chaudhuri SK, Nevin KP, Mehta T, Methé BA, Liu A, Ward JE, Woodard TL, Webster J, Lovley DR. 2006. Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens.. Environ Microbiol. 8(10):1805-15.

2007

Shelobolina ES, Nevin KP, Blakeney-Hayward JD, Johnsen CV, Plaia TW, Krader P, Woodard T, Holmes DE, Vanpraagh C G, Lovley DR. 2007. Geobacter pickeringii sp. nov., Geobacter argillaceus sp. nov. and Pelosinus fermentans gen. nov., sp. nov., isolated from subsurface kaolin lenses.. Int J Syst Evol Microbiol. 57(Pt 1):126-35.

Holmes DE, Nevin KP, Woodard TL, Peacock AD, Lovley DR. 2007. Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell.. Int J Syst Evol Microbiol. 57(Pt 4):701-7.

Nevin KP, Holmes DE, Woodard TL, Covalla SF, Lovley DR. 2007. Reclassification of Trichlorobacter thiogenes as Geobacter thiogenes comb. nov.. Int J Syst Evol Microbiol. 57(Pt 3):463-6.

Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al.. 2007. Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.

2008

O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al.. 2008. Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.

Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo JM, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR. 2008. Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.. Microbiology. 154(Pt 5):1422-35.

Risso C, Methé BA, Elifantz H, Holmes DE, Lovley DR. 2008. Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation.. Microbiology. 154(Pt 9):2589-99.

2009

Mouser PJ, N'guessan LA, Elifantz H, Holmes DE, Williams KH, Wilkins MJ, Long PE, Lovley DR. 2009. Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater.. Environ Sci Technol. 43(12):4386-92.

Mouser PJ, Holmes DE, Perpetua LA, DiDonato R, Postier B, Liu A, Lovley DR. 2009. Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation.. ISME J. 3(4):454-65.

Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR. 2009. Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.

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