Publications

Export 99 results:

Filters: Keyword is Phylogeny [Clear All Filters]

2022

Lovley DR, Holmes DE. 2022. Electromicrobiology: the ecophysiology of phylogenetically diverse electroactive microorganisms.. Nat Rev Microbiol. 20(1):5-19.

2021

Zhou J, Holmes DE, Tang H-Y, Lovley DR. 2021. Correlation of Key Physiological Properties of Isolates with Environment of Origin.. Appl Environ Microbiol. 87(13):e0073121.

2018

Walker DJf, Adhikari RY, Holmes DE, Ward JE, Woodard TL, Nevin KP, Lovley DR. 2018. Electrically conductive pili from pilin genes of phylogenetically diverse microorganisms.. ISME J. 12(1):48-58.

2016

Holmes DE, Dang Y, Walker DJF, Lovley DR. 2016. The electrically conductive pili of pecies are a recently evolved feature for extracellular electron transfer.. Microb Genom. 2(8):e000072.

Yun J, Malvankar NS, Ueki T, Lovley DR. 2016. Functional environmental proteomics: elucidating the role of a c-type cytochrome abundant during uranium bioremediation.. ISME J. 10(2):310-20.

2015

Stewart LC, Jung J-H, Kim Y-T, Kwon S-W, Park C-S, Holden JF. 2015. Methanocaldococcus bathoardescens sp. nov., a hyperthermophilic methanogen isolated from a volcanically active deep-sea hydrothermal vent.. Int J Syst Evol Microbiol. 65(Pt 4):1280-3.

2014

Mueller RC, Paula FS, Mirza BS, Rodrigues JLM, Nüsslein K, Bohannan BJM. 2014. Links between plant and fungal communities across a deforestation chronosequence in the Amazon rainforest.. ISME J. 8(7):1548-50.

Mirza BS, Potisap C, Nüsslein K, Bohannan BJM, Rodrigues JLM. 2014. Response of free-living nitrogen-fixing microorganisms to land use change in the Amazon rainforest.. Appl Environ Microbiol. 80(1):281-8.

Hensley SA, Jung J-H, Park C-S, Holden JF. 2014. Thermococcus paralvinellae sp. nov. and Thermococcus cleftensis sp. nov. of hyperthermophilic heterotrophs from deep-sea hydrothermal vents.. Int J Syst Evol Microbiol. 64(Pt 11):3655-9.

2013

Rodrigues JLM, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SMui, Feigl B et al.. 2013. Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities.. Proc Natl Acad Sci U S A. 110(3):988-93.

Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR. 2013. Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.. ISME J. 7(7):1286-98.

Williams KH, Wilkins MJ, A N'Guessan L, Arey B, Dodova E, Dohnalkova A, Holmes D, Lovley DR, Long PE. 2013. Field evidence of selenium bioreduction in a uranium-contaminated aquifer.. Environ Microbiol Rep. 5(3):444-52.

2012

Zhang T, Bain TS, Nevin KP, Barlett MA, Lovley DR. 2012. Anaerobic benzene oxidation by Geobacter species.. Appl Environ Microbiol. 78(23):8304-10.

Deangelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC. 2012. Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia.. MBio. 3(1)

Burand JP, Kim W, Afonso CL, Tulman ER, Kutish GF, Lu Z, Rock DL. 2012. Analysis of the genome of the sexually transmitted insect virus Helicoverpa zea nudivirus 2.. Viruses. 4(1):28-61.

Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S. 2012. Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.

Boles AR, Conneely T, McKeever R, Nixon P, Nüsslein KR, Ergas SJ. 2012. Performance of a pilot-scale packed bed reactor for perchlorate reduction using a sulfur oxidizing bacterial consortium.. Biotechnol Bioeng. 109(3):637-46.

Deangelis KM, Firestone MK. 2012. Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes.. Appl Environ Microbiol. 78(7):2459-61.

2011

Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC. 2011. Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.

Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS. 2011. Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).. Microb Biotechnol. 4(1):55-63.

Shi S, Richardson AE, O'Callaghan M, Deangelis KM, Jones EE, Stewart A, Firestone MK, Condron LM. 2011. Effects of selected root exudate components on soil bacterial communities.. FEMS Microbiol Ecol. 77(3):600-10.

Krushkal J, Sontineni S, Leang C, Qu Y, Adkins RM, Lovley DR. 2011. Genome diversity of the TetR family of transcriptional regulators in a metal-reducing bacterial family Geobacteraceae and other microbial species.. OMICS. 15(7-8):495-506.

Mackelprang R, Waldrop MP, Deangelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK. 2011. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.. Nature. 480(7377):368-71.

Johne R, Buck CB, Allander T, Atwood WJ, Garcea RL, Imperiale MJ, Major EO, Ramqvist T, Norkin LC. 2011. Taxonomical developments in the family Polyomaviridae.. Arch Virol. 156(9):1627-34.

2010

Butler JE, Young ND, Lovley DR. 2010. Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.. BMC Genomics. 11:40.

Pages