Publications

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A
Aklujkar M, Haveman SA, DiDonato R, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.  2012.  The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.. BMC Genomics. 13:690.
Aklujkar M, Lovley DR.  2010.  Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus.. BMC Evol Biol. 10:230.
Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.  2009.  The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.. BMC Microbiol. 9:109.
B
Boles AR, Conneely T, McKeever R, Nixon P, Nüsslein KR, Ergas SJ.  2012.  Performance of a pilot-scale packed bed reactor for perchlorate reduction using a sulfur oxidizing bacterial consortium.. Biotechnol Bioeng. 109(3):637-46.
Bond DR, Mester T, Nesbø CL, Izquierdo-Lopez AV, Collart FL, Lovley DR.  2005.  Characterization of citrate synthase from Geobacter sulfurreducens and evidence for a family of citrate synthases similar to those of eukaryotes throughout the Geobacteraceae.. Appl Environ Microbiol. 71(7):3858-65.
Butler JE, Young ND, Lovley DR.  2009.  Evolution from a respiratory ancestor to fill syntrophic and fermentative niches: comparative fenomics of six Geobacteraceae species.. BMC Genomics. 10:103.
D
Deangelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC.  2011.  Characterization of trapped lignin-degrading microbes in tropical forest soil.. PLoS One. 6(4):e19306.
F
Feng X, Rich SM, Akiyoshi D, Tumwine JK, Kekitiinwa A, Nabukeera N, Tzipori S, Widmer G.  2000.  Extensive polymorphism in Cryptosporidium parvum identified by multilocus microsatellite analysis.. Appl Environ Microbiol. 66(8):3344-9.
Ferreira MU, Ribeiro WL, Tonon AP, Kawamoto F, Rich SM.  2003.  Sequence diversity and evolution of the malaria vaccine candidate merozoite surface protein-1 (MSP-1) of Plasmodium falciparum.. Gene. 304:65-75.
Finneran KT, Johnsen CV, Lovley DR.  2003.  Rhodoferax ferrireducens sp. nov., a psychrotolerant, facultatively anaerobic bacterium that oxidizes acetate with the reduction of Fe(III).. Int J Syst Evol Microbiol. 53(Pt 3):669-73.
G
Gomez-Alvarez V, King GM, Nüsslein K.  2007.  Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages.. FEMS Microbiol Ecol. 60(1):60-73.
Gregory KB, Bond DR, Lovley DR.  2004.  Graphite electrodes as electron donors for anaerobic respiration.. Environ Microbiol. 6(6):596-604.
Griffith KL, Grossman AD.  2008.  A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.. J Mol Biol. 381(2):261-75.
H
Hayes LA, Lovley DR.  2002.  Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments.. Microb Ecol. 43(1):134-45.
Hensley SA, Jung J-H, Park C-S, Holden JF.  2014.  Thermococcus paralvinellae sp. nov. and Thermococcus cleftensis sp. nov. of hyperthermophilic heterotrophs from deep-sea hydrothermal vents.. Int J Syst Evol Microbiol. 64(Pt 11):3655-9.
Holmes DE, Bond DR, O'Neil RA, Reimers CE, Tender LR, Lovley DR.  2004.  Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments.. Microb Ecol. 48(2):178-90.
Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.  2013.  Molecular analysis of the in situ growth rates of subsurface Geobacter species.. Appl Environ Microbiol. 79(5):1646-53.
Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR.  2009.  Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.
Holmes DE, Nevin KP, Lovley DR.  2004.  Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.
Holmes DE, O'Neil RA, Vrionis HA, N'guessan LA, Ortiz-Bernad I, Larrahondo MJ, Adams LA, Ward JA, Nicoll JS, Nevin KP et al..  2007.  Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.. ISME J. 1(8):663-77.
J
Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.
Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.
K
Kashefi K, Holmes DE, Reysenbach A-L, Lovley DR.  2002.  Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov.. Appl Environ Microbiol. 68(4):1735-42.
Kashefi K, Tor JM, Holmes DE, Gaw Van Praagh CV, Reysenbach A-L, Lovley DR.  2002.  Geoglobus ahangari gen. nov., sp. nov., a novel hyperthermophilic archaeon capable of oxidizing organic acids and growing autotrophically on hydrogen with Fe(III) serving as the sole electron acceptor.. Int J Syst Evol Microbiol. 52(Pt 3):719-28.
L
Leang C, Lovley DR.  2005.  Regulation of two highly similar genes, omcB and omcC, in a 10 kb chromosomal duplication in Geobacter sulfurreducens.. Microbiology. 151(Pt 6):1761-7.

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