Publications

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A
Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N.  2010.  ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.. Nucleic Acids Res. 38(Web Server issue):W529-33.
B
Brendel V, Brocchieri L, Sandler SJ, Clark AJ, Karlin S.  1997.  Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms.. J Mol Evol. 44(5):528-41.
F
Feng X, Rich SM, Tzipori S, Widmer G.  2002.  Experimental evidence for genetic recombination in the opportunistic pathogen Cryptosporidium parvum.. Mol Biochem Parasitol. 119(1):55-62.
G
Garcia-Maruniak A, Abd-Alla AMM, Salem TZ, Parker AG, Lietze V-U, van Oers MM, Maruniak JE, Kim W, Burand JP, Cousserans F et al..  2009.  Two viruses that cause salivary gland hypertrophy in Glossina pallidipes and Musca domestica are related and form a distinct phylogenetic clade.. J Gen Virol. 90(Pt 2):334-46.
Gardocki M E, Lopes JM.  2003.  Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site.. J Biol Chem. 278(40):38646-52.
Glaser F, Pupko T, Paz I, Bell RE, Bechor-Shental D, Martz E, Ben-Tal N.  2003.  ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.. Bioinformatics. 19(1):163-4.
K
Kaadige MR, Lopes JM.  2006.  Analysis of Opi1p repressor mutants.. Curr Genet. 49(1):30-8.
Kang J Y, Hong Y, Ashida H, Shishioh N, Murakami Y, Morita YS, Maeda Y, Kinoshita T.  2005.  PIG-V involved in transferring the second mannose in glycosylphosphatidylinositol.. J Biol Chem. 280(10):9489-97.
Krushkal J, Juárez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.  2010.  Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.
Y
Yan B, Methé BA, Lovley DR, Krushkal J.  2004.  Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.. J Theor Biol. 230(1):133-44.
Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J.  2006.  Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.
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