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A
Kaadige MR, Lopes JM.  2006.  Analysis of Opi1p repressor mutants.. Curr Genet. 49(1):30-8.
Burand JP, Kim W, Afonso CL, Tulman ER, Kutish GF, Lu Z, Rock DL.  2012.  Analysis of the genome of the sexually transmitted insect virus Helicoverpa zea nudivirus 2.. Viruses. 4(1):28-61.
Burke WD, Malik HS, Rich SM, Eickbush TH.  2002.  Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lamblia.. Mol Biol Evol. 19(5):619-30.
Widmer G, Akiyoshi D, Buckholt MA, Feng X, Rich SM, Deary KM, Bowman CA, Xu P, Wang Y, Wang X et al..  2000.  Animal propagation and genomic survey of a genotype 1 isolate of Cryptosporidium parvum.. Mol Biochem Parasitol. 108(2):187-97.
Nevin KP, Kim B-C, Glaven RH, Johnson JP, Woodard TL, Methé BA, Didonato RJ, Covalla SF, Franks AE, Liu A et al..  2009.  Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells.. PLoS One. 4(5):e5628.
B
Sagaram U S, Deangelis KM, Trivedi P, Andersen GL, Lu S-E, Wang N.  2009.  Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing.. Appl Environ Microbiol. 75(6):1566-74.
Lloyd JR, Leang C, Hodges Myerson AL, Coppi MV, Cuifo S, Methe B, Sandler SJ, Lovley DR.  2003.  Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens.. Biochem J. 369(Pt 1):153-61.
C
Duran E, Komuniecki RW, Komuniecki PR, Wheelock MJ, Klingbeil MM, Ma YC, Johnson KR.  1993.  Characterization of cDNA clones for the 2-methyl branched-chain enoyl-CoA reductase. An enzyme involved in branched-chain fatty acid synthesis in anaerobic mitochondria of the parasitic nematode Ascaris suum.. J Biol Chem. 268(30):22391-6.
Bond DR, Mester T, Nesbø CL, Izquierdo-Lopez AV, Collart FL, Lovley DR.  2005.  Characterization of citrate synthase from Geobacter sulfurreducens and evidence for a family of citrate synthases similar to those of eukaryotes throughout the Geobacteraceae.. Appl Environ Microbiol. 71(7):3858-65.
Gomez-Alvarez V, King GM, Nüsslein K.  2007.  Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages.. FEMS Microbiol Ecol. 60(1):60-73.
Tran HT, Krushkal J, Antommattei FM, Lovley DR, Weis RM.  2008.  Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.. BMC Genomics. 9:471.
Holmes DE, Nevin KP, Lovley DR.  2004.  Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.
Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.
Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.
Segura D, Mahadevan R, Juárez K, Lovley DR.  2008.  Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.
Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J.  2006.  Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.
D
Finneran KT, Forbush HM, VanPraagh C GV, Lovley DR.  2002.  Desulfitobacterium metallireducens sp. nov., an anaerobic bacterium that couples growth to the reduction of metals and humic acids as well as chlorinated compounds.. Int J Syst Evol Microbiol. 52(Pt 6):1929-35.
Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS.  2011.  Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).. Microb Biotechnol. 4(1):55-63.
Caporale DA, Rich SM, Spielman A, Telford SR, Kocher TD.  1995.  Discriminating between Ixodes ticks by means of mitochondrial DNA sequences.. Mol Phylogenet Evol. 4(4):361-5.
Newman DK, Kennedy EK, Coates JD, Ahmann D, Ellis DJ, Lovley DR, Morel FM.  1997.  Dissimilatory arsenate and sulfate reduction in Desulfotomaculum auripigmentum sp. nov.. Arch Microbiol. 168(5):380-8.
Rich SM, Caporale DA, Telford SR, Kocher TD, Hartl DL, Spielman A.  1995.  Distribution of the Ixodes ricinus-like ticks of eastern North America.. Proc Natl Acad Sci U S A. 92(14):6284-8.
Sandler SJ, Hugenholtz P, Schleper C, DeLong EF, Pace NR, Clark AJ.  1999.  Diversity of radA genes from cultured and uncultured archaea: comparative analysis of putative RadA proteins and their use as a phylogenetic marker.. J Bacteriol. 181(3):907-15.
McCool JD, Ford CC, Sandler SJ.  2004.  A dnaT mutant with phenotypes similar to those of a priA2::kan mutant in Escherichia coli K-12.. Genetics. 167(2):569-78.
E
Shi S, Richardson AE, O'Callaghan M, Deangelis KM, Jones EE, Stewart A, Firestone MK, Condron LM.  2011.  Effects of selected root exudate components on soil bacterial communities.. FEMS Microbiol Ecol. 77(3):600-10.
Ayala FJ, Escalante AA, Rich SM.  1999.  Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum.. Parassitologia. 41(1-3):55-68.

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