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Yan B, Lovley DR, Krushkal J.  2007.  Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens.. Biosystems. 90(2):421-41.
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Wood TI, Griffith KL, Fawcett WP, Jair KW, Schneider TD, Wolf RE.  1999.  Interdependence of the position and orientation of SoxS binding sites in the transcriptional activation of the class I subset of Escherichia coli superoxide-inducible promoters.. Mol Microbiol. 34(3):414-30.
Weitzman PD, Danson MJ.  1976.  Citrate synthase.. Curr Top Cell Regul. 10:161-204.
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Ueki T, Lovley DR.  2010.  Novel regulatory cascades controlling expression of nitrogen-fixation genes in Geobacter sulfurreducens.. Nucleic Acids Res. 38(21):7485-99.
Ueki T, Lovley DR.  2007.  Heat-shock sigma factor RpoH from Geobacter sulfurreducens.. Microbiology. 153(Pt 3):838-46.
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Smith RJ, Bryant RG.  1975.  Metal substitutions incarbonic anhydrase: a halide ion probe study.. Biochem Biophys Res Commun. 66(4):1281-6.
Sinelnikova EM, Dvoretskova TV, Kagan ZS.  1975.  [Intermediate plateaux in kinetics of the reaction catalyzed by biodegradative L-threonine dehydratase from Escherichia coli].. Biokhimiia. 40(3):645-51.
Sandler SJ, Chackerian B, Li JT, Clark AJ.  1992.  Sequence and complementation analysis of recF genes from Escherichia coli, Salmonella typhimurium, Pseudomonas putida and Bacillus subtilis: evidence for an essential phosphate binding loop.. Nucleic Acids Res. 20(4):839-45.
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Rodier F.  1976.  [Spectral properties of porcine plasminogen: study of the acidic transition (author's transl)].. Eur J Biochem. 63(2):553-62.
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Mayrose I, Penn O, Erez E, Rubinstein ND, Shlomi T, Freund N T, Bublil EM, Ruppin E, Sharan R, Gershoni JM et al..  2007.  Pepitope: epitope mapping from affinity-selected peptides.. Bioinformatics. 23(23):3244-6.
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Lopper M, Boonsombat R, Sandler SJ, Keck JL.  2007.  A hand-off mechanism for primosome assembly in replication restart.. Mol Cell. 26(6):781-93.
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Krushkal J, Juárez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.  2010.  Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.
Krushkal J, Sontineni S, Leang C, Qu Y, Adkins RM, Lovley DR.  2011.  Genome diversity of the TetR family of transcriptional regulators in a metal-reducing bacterial family Geobacteraceae and other microbial species.. OMICS. 15(7-8):495-506.
Klingbeil MM, Walker DJ, Arnette R, Sidawy E, Hayton K, Komuniecki PR, Komuniecki R.  1996.  Identification of a novel dihydrolipoyl dehydrogenase-binding protein in the pyruvate dehydrogenase complex of the anaerobic parasitic nematode, Ascaris suum.. J Biol Chem. 271(10):5451-7.
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Inoue K, Qian X, Morgado L, Kim B-C, Mester T, Izallalen M, Salgueiro CA, Lovley DR.  2010.  Purification and characterization of OmcZ, an outer-surface, octaheme c-type cytochrome essential for optimal current production by Geobacter sulfurreducens.. Appl Environ Microbiol. 76(12):3999-4007.
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Griffith KL, Becker SM, Wolf RE.  2005.  Characterization of TetD as a transcriptional activator of a subset of genes of the Escherichia coli SoxS/MarA/Rob regulon.. Mol Microbiol. 56(4):1103-17.
Griffith KL, Wolf RE.  2001.  Systematic mutagenesis of the DNA binding sites for SoxS in the Escherichia coli zwf and fpr promoters: identifying nucleotides required for DNA binding and transcription activation.. Mol Microbiol. 40(5):1141-54.
Griffith KL, Grossman AD.  2008.  A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.. J Mol Biol. 381(2):261-75.
Griffith KL, Shah IM, Myers TE, O'Neill MC, Wolf RE.  2002.  Evidence for "pre-recruitment" as a new mechanism of transcription activation in Escherichia coli: the large excess of SoxS binding sites per cell relative to the number of SoxS molecules per cell.. Biochem Biophys Res Commun. 291(4):979-86.
Griffith KL, Wolf RE.  2002.  A comprehensive alanine scanning mutagenesis of the Escherichia coli transcriptional activator SoxS: identifying amino acids important for DNA binding and transcription activation.. J Mol Biol. 322(2):237-57.
Griffith KL, Wolf RE.  2004.  Genetic evidence for pre-recruitment as the mechanism of transcription activation by SoxS of Escherichia coli: the dominance of DNA binding mutations of SoxS.. J Mol Biol. 344(1):1-10.
Gardocki M E, Lopes JM.  2003.  Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site.. J Biol Chem. 278(40):38646-52.
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Chow YW, Pietranico R, Mukerji A.  1975.  Studies of oxygen binding energy to hemoglobin molecule.. Biochem Biophys Res Commun. 66(4):1424-31.
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