Publications

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2013
Ver Eecke HC, Akerman NH, Huber JA, Butterfield DA, Holden JF.  2013.  Growth kinetics and energetics of a deep-sea hyperthermophilic methanogen under varying environmental conditions.. Environ Microbiol Rep. 5(5):665-71.
Yan J, Im J, Yang Y, Löffler FE.  2013.  Guided cobalamin biosynthesis supports Dehalococcoides mccartyi reductive dechlorination activity.. Philos Trans R Soc Lond B Biol Sci. 368(1616):20120320.
2012
Blanco M B, Elfawal MA, Durden LA, Beati L, Xu G, Godfrey LR, Rich SM.  2012.  Genetic diversity of ixodid ticks parasitizing eastern mouse and dwarf lemurs in Madagascar, with descriptions of the larva, nymph and male of Ixodes lemuris (Acari: Ixodidae).. J Parasitol.
Holmes DE, Risso C, Smith JA, Lovley DR.  2012.  Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.. ISME J. 6(1):146-57.
Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP.  2012.  Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.. Proc Natl Acad Sci U S A. 109(32):E2173-82.
2011
Strycharz SM, Glaven RH, Coppi MV, Gannon SM, Perpetua LA, Liu A, Nevin KP, Lovley DR.  2011.  Gene expression and deletion analysis of mechanisms for electron transfer from electrodes to Geobacter sulfurreducens.. Bioelectrochemistry. 80(2):142-50.
Krushkal J, Sontineni S, Leang C, Qu Y, Adkins RM, Lovley DR.  2011.  Genome diversity of the TetR family of transcriptional regulators in a metal-reducing bacterial family Geobacteraceae and other microbial species.. OMICS. 15(7-8):495-506.
Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR.  2011.  Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.
Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A-E et al..  2011.  Geobacter: the microbe electric's physiology, ecology, and practical applications.. Adv Microb Physiol. 59:1-100.
2010
Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR.  2010.  The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.. BMC Genomics. 11:490.
Ueki T, Lovley DR.  2010.  Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.. Nucleic Acids Res. 38(3):810-21.
Krushkal J, Juárez K, Barbe JF, Qu Y, Andrade A, Puljic M, Adkins RM, Lovley DR, Ueki T.  2010.  Genome-wide survey for PilR recognition sites of the metal-reducing prokaryote Geobacter sulfurreducens.. Gene. 469(1-2):31-44.
2009
Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.  2009.  The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.. BMC Microbiol. 9:109.
Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al..  2009.  Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.
Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.  2009.  Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.
Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Juárez K, Núñez C, Reguera G, DiDonato R, Postier B et al..  2009.  Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.. BMC Genomics. 10:331.
Qu Y, Brown P, Barbe JF, Puljic M, Merino E, Adkins RM, Lovley DR, Krushkal J.  2009.  GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens.. OMICS. 13(5):439-49.
2008
O'Neil RA, Holmes DE, Coppi MV, Adams LA, Larrahondo JM, Ward JE, Nevin KP, Woodard TL, Vrionis HA, N'guessan LA et al..  2008.  Gene transcript analysis of assimilatory iron limitation in Geobacteraceae during groundwater bioremediation.. Environ Microbiol. 10(5):1218-30.
Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo JM, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR.  2008.  Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes.. Microbiology. 154(Pt 5):1422-35.
Haveman SA, Didonato RJ, Villanueva L, Shelobolina ES, Postier BL, Xu B, Liu A, Lovley DR.  2008.  Genome-wide gene expression patterns and growth requirements suggest that Pelobacter carbinolicus reduces Fe(III) indirectly via sulfide production.. Appl Environ Microbiol. 74(14):4277-84.
Izallalen M, Mahadevan R, Burgard A, Postier B, DiDonato R, Sun J, Schilling CH, Lovley DR.  2008.  Geobacter sulfurreducens strain engineered for increased rates of respiration.. Metab Eng. 10(5):267-75.
Shelobolina ES, Vrionis HA, Findlay RH, Lovley DR.  2008.  Geobacter uraniireducens sp. nov., isolated from subsurface sediment undergoing uranium bioremediation.. Int J Syst Evol Microbiol. 58(Pt 5):1075-8.
Strycharz SM, Woodard TL, Johnson JP, Nevin KP, Sanford RA, Löffler FE, Lovley DR.  2008.  Graphite electrode as a sole electron donor for reductive dechlorination of tetrachlorethene by Geobacter lovleyi.. Appl Environ Microbiol. 74(19):5943-7.
Kashefi K, Shelobolina ES, Elliott CW, Lovley DR.  2008.  Growth of thermophilic and hyperthermophilic Fe(III)-reducing microorganisms on a ferruginous smectite as the sole electron acceptor.. Appl Environ Microbiol. 74(1):251-8.
Lanthier M, Gregory KB, Lovley DR.  2008.  Growth with high planktonic biomass in Shewanella oneidensis fuel cells.. FEMS Microbiol Lett. 278(1):29-35.

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