Publications

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Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J.  2006.  Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.
Yan B, Methé BA, Lovley DR, Krushkal J.  2004.  Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.. J Theor Biol. 230(1):133-44.
Segura D, Mahadevan R, Juárez K, Lovley DR.  2008.  Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.
Holmes DE, Nevin KP, Lovley DR.  2004.  Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.
Tran HT, Krushkal J, Antommattei FM, Lovley DR, Weis RM.  2008.  Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.. BMC Genomics. 9:471.
Butler JE, Young ND, Aklujkar M, Lovley DR.  2012.  Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.. BMC Genomics. 13:471.
Lovley DR.  2003.  Cleaning up with genomics: applying molecular biology to bioremediation.. Nat Rev Microbiol. 1(1):35-44.
Ueki T, Walker DJF, Woodard TL, Nevin KP, Nonnenmann SS, Lovley DR.  2020.  An Chassis for Production of Electrically Conductive Protein Nanowires.. ACS Synth Biol. 9(3):647-654.
Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho B-K, Elkins JG, Nevin KP, Barrett CL et al..  2013.  Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.
Nagarajan H, Sahin M, Nogales J, Latif H, Lovley DR, Ebrahim A, Zengler K.  2013.  Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii.. Microb Cell Fact. 12:118.
Bond DR, Mester T, Nesbø CL, Izquierdo-Lopez AV, Collart FL, Lovley DR.  2005.  Characterization of citrate synthase from Geobacter sulfurreducens and evidence for a family of citrate synthases similar to those of eukaryotes throughout the Geobacteraceae.. Appl Environ Microbiol. 71(7):3858-65.
Giloteaux L, Holmes DE, Williams KH, Wrighton KC, Wilkins MJ, Montgomery AP, Smith JA, Orellana R, Thompson CA, Roper TJ et al..  2013.  Characterization and transcription of arsenic respiration and resistance genes during in situ uranium bioremediation.. ISME J. 7(2):370-83.
Nagarajan H, Embree M, Rotaru A-E, Shrestha PM, Feist AM, Palsson BØ, Lovley DR, Zengler K.  2013.  Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association.. Nat Commun. 4:2809.
Malvankar NS, King GM, Lovley DR.  2015.  Centimeter-long electron transport in marine sediments via conductive minerals.. ISME J. 9(2):527-31.
Chen S, Rotaru A-E, Liu F, Philips J, Woodard TL, Nevin KP, Lovley DR.  2014.  Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures.. Bioresour Technol. 173:82-86.
Zheng S, Liu F, Wang B, Zhang Y, Lovley DR.  2020.   Capable of Direct Interspecies Electron Transfer.. Environ Sci Technol. 54(23):15347-15354.
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Lovley DR.  2006.  Bug juice: harvesting electricity with microorganisms.. Nat Rev Microbiol. 4(7):497-508.
Lloyd JR, Lovley DR, Macaskie LE.  2003.  Biotechnological application of metal-reducing microorganisms.. Adv Appl Microbiol. 53:85-128.
Williams KH, Bargar JR, Lloyd JR, Lovley DR.  2013.  Bioremediation of uranium-contaminated groundwater: a systems approach to subsurface biogeochemistry.. Curr Opin Biotechnol. 24(3):489-97.
Fu T, Liu X, Gao H, Ward JE, Liu X, Yin B, Wang Z, Zhuo Y, Walker DJF, J Yang J et al..  2020.  Bioinspired bio-voltage memristors.. Nat Commun. 11(1):1861.
Philips J, Rabaey K, Lovley DR, Vargas M.  2017.  Biofilm Formation by Clostridium ljungdahlii Is Induced by Sodium Chloride Stress: Experimental Evaluation and Transcriptome Analysis.. PLoS One. 12(1):e0170406.
Reguera G, Nevin KP, Nicoll JS, Covalla SF, Woodard TL, Lovley DR.  2006.  Biofilm and nanowire production leads to increased current in Geobacter sulfurreducens fuel cells.. Appl Environ Microbiol. 72(11):7345-8.
Qian X, Mester T, Morgado L, Arakawa T, Sharma ML, Inoue K, Joseph C, Salgueiro CA, Maroney MJ, Lovley DR.  2011.  Biochemical characterization of purified OmcS, a c-type cytochrome required for insoluble Fe(III) reduction in Geobacter sulfurreducens.. Biochim Biophys Acta. 1807(4):404-12.
Lloyd JR, Leang C, Hodges Myerson AL, Coppi MV, Cuifo S, Methe B, Sandler SJ, Lovley DR.  2003.  Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens.. Biochem J. 369(Pt 1):153-61.
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Vargas M, Malvankar NS, Tremblay P-L, Leang C, Smith JA, Patel P, Snoeyenbos-West O, Nevin KP, Lovley DR.  2013.  Aromatic amino acids required for pili conductivity and long-range extracellular electron transport in Geobacter sulfurreducens.. mBio. 4(2):e00105-13.

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