Publications

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2013
Vriezen JAC, de Bruijn FJ, Nüsslein K.  2013.  Identification and characterization of a NaCl-responsive genetic locus involved in survival during desiccation in Sinorhizobium meliloti.. Appl Environ Microbiol. 79(18):5693-700.
Im J, Lee J, Löffler FE.  2013.  Interference of ferric ions with ferrous iron quantification using the ferrozine assay.. J Microbiol Methods. 95(3):366-7.
Deangelis KM, D'haeseleer P, Chivian D, Simmons B, Arkin AP, Mavromatis K, Malfatti S, Tringe S, Hazen TC.  2013.  Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.. Stand Genomic Sci. 7(3):382-98.
Lee J-E, Kim I-H, Jung J-H, Seo D-H, Kang S-G, Holden JF, Cha J, Park C-S.  2013.  Molecular cloning and enzymatic characterization of cyclomaltodextrinase from hyperthermophilic archaeon Thermococcus sp. CL1.. J Microbiol Biotechnol. 23(8):1060-9.
Hatzios SK, Baer CE, Rustad TR, M Siegrist S, Pang JM, Ortega C, Alber T, Grundner C, Sherman DR, Bertozzi CR.  2013.  Osmosensory signaling in Mycobacterium tuberculosis mediated by a eukaryotic-like Ser/Thr protein kinase.. Proc Natl Acad Sci U S A. 110(52):E5069-77.
Shetty A, Swaminathan A, Lopes JM.  2013.  Transcription regulation of a yeast gene from a downstream location.. J Mol Biol. 425(3):457-65.
Benmerzouga I, Concepción-Acevedo J, Kim H-S, Vandoros AV, Cross GAM, Klingbeil MM, Li B.  2013.  Trypanosoma brucei Orc1 is essential for nuclear DNA replication and affects both VSG silencing and VSG switching.. Mol Microbiol. 87(1):196-210.
Pold G, DeAngelis KM.  2013.  Up against the wall: the effects of climate warming on soil microbial diversity and the potential for feedbacks to the carbon cycle.. Diversity. 5(2):409-425.
2012
Deangelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC.  2012.  Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia.. MBio. 3(1)
Burand JP, Kim W, Afonso CL, Tulman ER, Kutish GF, Lu Z, Rock DL.  2012.  Analysis of the genome of the sexually transmitted insect virus Helicoverpa zea nudivirus 2.. Viruses. 4(1):28-61.
Borglin S, Joyner D, Deangelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T.  2012.  Application of phenotypic microarrays to environmental microbiology.. Curr Opin Biotechnol. 23(1):41-8.
McKeever R, Sheppard D, Nüsslein K, Baek K-H, Rieber K, Ergas SJ, Forbes R, Hilyard M, Park C.  2012.  Biodegradation of ethylene dibromide (1,2-dibromoethane [EDB]) in microcosms simulating in situ and biostimulated conditions.. J Hazard Mater. 209-210:92-8.
Neveu G, Cassonnet P, Vidalain P-O, Rolloy C, Mendoza J, Jones L, Tangy F, Muller M, Demeret C, Tafforeau L et al..  2012.  Comparative analysis of virus–host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. Methods. 58:349–359.
Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.
Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.
Vriezen J A, de Bruijn FJ, Nüsslein KR.  2012.  Desiccation induces viable but Non-Culturable cells in Sinorhizobium meliloti 1021.. AMB Express. 2(1):6.
Zhuang K, Ma E, Lovley DR, Mahadevan R.  2012.  The design of long-term effective uranium bioremediation strategy using a community metabolic model.. Biotechnol Bioeng. 109(10):2475-83.
Kuksin D, Norkin LC.  2012.  Disassembly of simian virus 40 during passage through the endoplasmic reticulum and in the cytoplasm.. J Virol. 86(3):1555-62.
Kuksin D, Norkin LC.  2012.  Disassociation of the SV40 Genome from Capsid Proteins Prior to Nuclear Entry.. Virol J. 9(1):158.
Concepción-Acevedo J, Luo J, Klingbeil MM.  2012.  Dynamic localization of Trypanosoma brucei mitochondrial DNA polymerase ID.. Eukaryot Cell. 11(7):844-55.
Malvankar NS, Lau J, Nevin KP, Franks AE, Tuominen MT, Lovley DR.  2012.  Electrical conductivity in a mixed-species biofilm.. Appl Environ Microbiol. 78(16):5967-71.
Lovley DR.  2012.  Electromicrobiology.. Annu Rev Microbiol.
Massoni SC, Leeson MC, Long J E, Gemme K, Mui A, Sandler SJ.  2012.  Factors Limiting SOS Expression in Log-Phase Cells of Escherichia coli.. J Bacteriol. 194(19):5325-33.
Blanco M B, Elfawal MA, Durden LA, Beati L, Xu G, Godfrey LR, Rich SM.  2012.  Genetic diversity of ixodid ticks parasitizing eastern mouse and dwarf lemurs in Madagascar, with descriptions of the larva, nymph and male of Ixodes lemuris (Acari: Ixodidae).. J Parasitol.
Holmes DE, Risso C, Smith JA, Lovley DR.  2012.  Genome-scale analysis of anaerobic benzoate and phenol metabolism in the hyperthermophilic archaeon Ferroglobus placidus.. ISME J. 6(1):146-57.

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