Publications

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2013
Qiu Y, Nagarajan H, Embree M, Shieu W, Abate E, Juárez K, Cho B-K, Elkins JG, Nevin KP, Barrett CL et al..  2013.  Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.
Holmes DE, Giloteaux L, Williams KH, Wrighton KC, Wilkins MJ, Thompson CA, Roper TJ, Long PE, Lovley DR.  2013.  Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater.. ISME J. 7(7):1286-98.
Wilkins MJ, Wrighton KC, Nicora CD, Williams KH, McCue LAnn, Handley KM, Miller CS, Giloteaux L, Montgomery AP, Lovley DR et al..  2013.  Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.. PLoS One. 8(3):e57819.
Holmes DE, Giloteaux L, Barlett M, Chavan MA, Smith JA, Williams KH, Wilkins M, Long P, Lovley DR.  2013.  Molecular analysis of the in situ growth rates of subsurface Geobacter species.. Appl Environ Microbiol. 79(5):1646-53.
Smith JA, Lovley DR, Tremblay P-L.  2013.  Outer cell surface components essential for Fe(III) oxide reduction by Geobacter metallireducens.. Appl Environ Microbiol. 79(3):901-7.
Shrestha PMalla, Rotaru A-E, Aklujkar M, Liu F, Shrestha M, Summers ZM, Malvankar N, Flores DCarlo, Lovley DR.  2013.  Syntrophic growth with direct interspecies electron transfer as the primary mechanism for energy exchange.. Environ Microbiol Rep. 5(6):904-10.
Orellana R, Leavitt JJ, Comolli LR, Csencsits R, Janot N, Flanagan KA, Gray AS, Leang C, Izallalen M, Mester T et al..  2013.  U(VI) reduction by diverse outer surface c-type cytochromes of Geobacter sulfurreducens.. Appl Environ Microbiol. 79(20):6369-74.
Shrestha PMalla, Nevin KP, Shrestha M, Lovley DR.  2013.  When is a microbial culture "pure"? Persistent cryptic contaminant escapes detection even with deep genome sequencing. mBio. 4(2):e00591-12.
2012
Zhang T, Bain TS, Nevin KP, Barlett MA, Lovley DR.  2012.  Anaerobic benzene oxidation by Geobacter species.. Appl Environ Microbiol. 78(23):8304-10.
Butler JE, Young ND, Aklujkar M, Lovley DR.  2012.  Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.. BMC Genomics. 13:471.
Rotaru A-E, Shrestha PM, Liu F, Ueki T, Nevin K, Summers ZM, Lovley DR.  2012.  Interspecies electron transfer via hydrogen and formate rather than direct electrical connections in cocultures of Pelobacter carbinolicus and Geobacter sulfurreducens.. Appl Environ Microbiol. 78(21):7645-51.
Lovley DR.  2012.  Long-range electron transport to Fe(III) oxide via pili with metallic-like conductivity.. Biochem Soc Trans. 40(6):1186-90.
Franks AE, Glaven RH, Lovley DR.  2012.  Real-time spatial gene expression analysis within current-producing biofilms.. ChemSusChem. 5(6):1092-8.
Tremblay P-L, Lovley DR.  2012.  Role of the NiFe hydrogenase Hya in oxidative stress defense in Geobacter sulfurreducens.. J Bacteriol. 194(9):2248-53.
Malvankar NS, Mester T, Tuominen MT, Lovley DR.  2012.  Supercapacitors based on c-type cytochromes using conductive nanostructured networks of living bacteria.. Chemphyschem. 13(2):463-8.
Richter LV, Sandler SJ, Weis RM.  2012.  Two isoforms of Geobacter sulfurreducens PilA have distinct roles in pilus biogenesis, cytochrome localization, extracellular electron transfer, and biofilm formation.. J Bacteriol. 194(10):2551-63.
2011
Qian X, Mester T, Morgado L, Arakawa T, Sharma ML, Inoue K, Joseph C, Salgueiro CA, Maroney MJ, Lovley DR.  2011.  Biochemical characterization of purified OmcS, a c-type cytochrome required for insoluble Fe(III) reduction in Geobacter sulfurreducens.. Biochim Biophys Acta. 1807(4):404-12.
Tremblay P-L, Summers ZM, Glaven RH, Nevin KP, Zengler K, Barrett CL, Qiu Y, Palsson BO, Lovley DR.  2011.  A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.
Wilkins MJ, Callister SJ, Miletto M, Williams KH, Nicora CD, Lovley DR, Long PE, Lipton MS.  2011.  Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).. Microb Biotechnol. 4(1):55-63.
Fang Y, Scheibe TD, Mahadevan R, Garg S, Long PE, Lovley DR.  2011.  Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model.. J Contam Hydrol. 122(1-4):96-103.
Strycharz SM, Glaven RH, Coppi MV, Gannon SM, Perpetua LA, Liu A, Nevin KP, Lovley DR.  2011.  Gene expression and deletion analysis of mechanisms for electron transfer from electrodes to Geobacter sulfurreducens.. Bioelectrochemistry. 80(2):142-50.
Zhuang K, Izallalen M, Mouser P, Richter H, Risso C, Mahadevan R, Lovley DR.  2011.  Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments.. ISME J. 5(2):305-16.
Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru A-E et al..  2011.  Geobacter: the microbe electric's physiology, ecology, and practical applications.. Adv Microb Physiol. 59:1-100.
Mahadevan R, Palsson BØ, Lovley DR.  2011.  In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling.. Nat Rev Microbiol. 9(1):39-50.
Yun J, Ueki T, Miletto M, Lovley DR.  2011.  Monitoring the metabolic status of geobacter species in contaminated groundwater by quantifying key metabolic proteins with Geobacter-specific antibodies.. Appl Environ Microbiol. 77(13):4597-602.

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