Publications

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2009
Ver Eecke HC, Kelley DS, Holden JF.  2009.  Abundances of hyperthermophilic autotrophic Fe(III) oxide reducers and heterotrophs in hydrothermal sulfide chimneys of the northeastern Pacific Ocean.. Appl Environ Microbiol. 75(1):242-5.
Nevin KP, Kim B-C, Glaven RH, Johnson JP, Woodard TL, Methé BA, Didonato RJ, Covalla SF, Franks AE, Liu A et al..  2009.  Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells.. PLoS One. 4(5):e5628.
Lienkamp K, Madkour AE, Kumar K-N, Nüsslein K, Tew GN.  2009.  Antimicrobial polymers prepared by ring-opening metathesis polymerization: manipulating antimicrobial properties by organic counterion and charge density variation.. Chemistry. 15(43):11715-22.
Sagaram U S, Deangelis KM, Trivedi P, Andersen GL, Lu S-E, Wang N.  2009.  Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing.. Appl Environ Microbiol. 75(6):1566-74.
Sahu AK, Conneely T, Nüsslein KR, Ergas SJ.  2009.  Biological perchlorate reduction in packed bed reactors using elemental sulfur.. Environ Sci Technol. 43(12):4466-71.
Gabriel GJ, Maegerlein JA, Nelson CF, Dabkowski JM, Eren T, Nüsslein K, Tew GN.  2009.  Comparison of facially amphiphilic versus segregated monomers in the design of antibacterial copolymers.. Chemistry. 15(2):433-9.
Walk ST, Xu G, Stull JW, Rich SM.  2009.  Correlation between tick density and pathogen endemicity, New Hampshire.. Emerg Infect Dis. 15(4):585-7.
Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR.  2009.  Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.. Microb Biotechnol. 2(2):274-86.
Ishikawa E, Ishikawa T, Morita YS, Toyonaga K, Yamada H, Takeuchi O, Kinoshita T, Akira S, Yoshikai Y, Yamasaki S.  2009.  Direct recognition of the mycobacterial glycolipid, trehalose dimycolate, by C-type lectin Mincle.. J Exp Med. 206(13):2879-88.
Krushkal J, Leang C, Barbe JF, Qu Y, Yan B, Puljic M, Adkins RM, Lovley DR.  2009.  Diversity of promoter elements in a Geobacter sulfurreducens mutant adapted to disruption in electron transfer.. Funct Integr Genomics. 9(1):15-25.
Lienkamp K, Kumar K-N, Som A, Nüsslein K, Tew GN.  2009.  "Doubly selective" antimicrobial polymers: how do they differentiate between bacteria? Chemistry. 15(43):11710-4.
Lee S-W, Im J, Dispirito AA, Bodrossy L, Barcelona MJ, Semrau JD.  2009.  Effect of nutrient and selective inhibitor amendments on methane oxidation, nitrous oxide production, and key gene presence and expression in landfill cover soils: characterization of the role of methanotrophs, nitrifiers, and denitrifiers.. Appl Microbiol Biotechnol. 85(2):389-403.
Rubinstein ND, Mayrose I, Martz E, Pupko T.  2009.  Epitopia: a web-server for predicting B-cell epitopes.. BMC Bioinformatics. 10:287.
Li X, Thomas BN, Rich SM, Ecker D, Tumwine JK, Foulkes AS.  2009.  Estimating and testing haplotype-trait associations in non-diploid populations.. J R Stat Soc Ser C Appl Stat. 58(5):663-678.
Butler JE, Young ND, Lovley DR.  2009.  Evolution from a respiratory ancestor to fill syntrophic and fermentative niches: comparative fenomics of six Geobacteraceae species.. BMC Genomics. 10:103.
Junglen S, Kurth A, Kuehl H, Quan P-L, Ellerbrok H, Pauli G, Nitsche A, Nunn C, Rich SM, Lipkin WI et al..  2009.  Examining landscape factors influencing relative distribution of mosquito genera and frequency of virus infection.. Ecohealth. 6(2):239-49.
Madkour AE, Dabkowski JM, Nusslein K, Tew GN.  2009.  Fast disinfecting antimicrobial surfaces.. Langmuir. 25(2):1060-7.
Lovley DR.  2009.  Future shock from the microbe electric.. Microb Biotechnol. 2(2):139-41.
Aklujkar M, Krushkal J, DiBartolo G, Lapidus A, Land ML, Lovley DR.  2009.  The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens.. BMC Microbiol. 9:109.
Risso C, Sun J, Zhuang K, Mahadevan R, DeBoy R, Ismail W, Shrivastava S, Huot H, Kothari S, Daugherty S et al..  2009.  Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.. BMC Genomics. 10:447.
Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.  2009.  Genome-scale constraint-based modeling of Geobacter metallireducens.. BMC Syst Biol. 3:15.
Leang C, Krushkal J, Ueki T, Puljic M, Sun J, Juárez K, Núñez C, Reguera G, DiDonato R, Postier B et al..  2009.  Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens.. BMC Genomics. 10:331.
Qu Y, Brown P, Barbe JF, Puljic M, Merino E, Adkins RM, Lovley DR, Krushkal J.  2009.  GSEL version 2, an online genome-wide query system of operon organization and regulatory sequence elements of Geobacter sulfurreducens.. OMICS. 13(5):439-49.
Sahu AK, Conneely T, Nüsslein K, Ergas SJ.  2009.  Hydrogenotrophic denitrification and perchlorate reduction in ion exchange brines using membrane biofilm reactors.. Biotechnol Bioeng. 104(3):483-91.

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