Publications

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Rubinstein ND, Mayrose I, Martz E, Pupko T.  2009.  Epitopia: a web-server for predicting B-cell epitopes.. BMC Bioinformatics. 10:287.
Li X, Thomas BN, Rich SM, Ecker D, Tumwine JK, Foulkes AS.  2009.  Estimating and testing haplotype-trait associations in non-diploid populations.. J R Stat Soc Ser C Appl Stat. 58(5):663-678.
Huijbregts LA, Schreurs M.  1975.  Evaluation of amplitude and frequency changes of miniature potentials with a poor signal-to-noise ratio.. Comp Biochem Physiol C. 52(1):11-6.
Anderson RT, Chapelle FH, Lovley DR.  1998.  Evidence against hydrogen-based microbial ecosystems in basalt aquifers. Science. 281(5379):976-7.
Bond DR, Lovley DR.  2005.  Evidence for involvement of an electron shuttle in electricity generation by Geothrix fermentans.. Appl Environ Microbiol. 71(4):2186-9.
Griffith KL, Shah IM, Myers TE, O'Neill MC, Wolf RE.  2002.  Evidence for "pre-recruitment" as a new mechanism of transcription activation in Escherichia coli: the large excess of SoxS binding sites per cell relative to the number of SoxS molecules per cell.. Biochem Biophys Res Commun. 291(4):979-86.
Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LM, Nicora C, Norbeck AD, Taylor RC, Aldrich JT et al..  2013.  Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1.. Front Microbiol. 4:280.
Qian X, Reguera G, Mester T, Lovley DR.  2007.  Evidence that OmcB and OmpB of Geobacter sulfurreducens are outer membrane surface proteins.. FEMS Microbiol Lett. 277(1):21-7.
Butler JE, Young ND, Lovley DR.  2009.  Evolution from a respiratory ancestor to fill syntrophic and fermentative niches: comparative fenomics of six Geobacteraceae species.. BMC Genomics. 10:103.
Butler JE, Young ND, Lovley DR.  2010.  Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes.. BMC Genomics. 11:40.
Ayala FJ, Escalante AA, Rich SM.  1999.  Evolution of Plasmodium and the recent origin of the world populations of Plasmodium falciparum.. Parassitologia. 41(1-3):55-68.
Brendel V, Brocchieri L, Sandler SJ, Clark AJ, Karlin S.  1997.  Evolutionary comparisons of RecA-like proteins across all major kingdoms of living organisms.. J Mol Evol. 44(5):528-41.
Junglen S, Kurth A, Kuehl H, Quan P-L, Ellerbrok H, Pauli G, Nitsche A, Nunn C, Rich SM, Lipkin WI et al..  2009.  Examining landscape factors influencing relative distribution of mosquito genera and frequency of virus infection.. Ecohealth. 6(2):239-49.
Li X, Foulkes AS, Yucel RM, Rich SM.  2007.  An expectation maximization approach to estimate malaria haplotype frequencies in multiply infected children.. Stat Appl Genet Mol Biol. 6:Article33.
Feng X, Rich SM, Tzipori S, Widmer G.  2002.  Experimental evidence for genetic recombination in the opportunistic pathogen Cryptosporidium parvum.. Mol Biochem Parasitol. 119(1):55-62.
Nüsslein K, Maris D, Timmis K, Dwyer DF.  1992.  Expression and transfer of engineered catabolic pathways harbored by Pseudomonas spp. introduced into activated sludge microcosms.. Appl Environ Microbiol. 58(10):3380-6.
Elifantz H, N'guessan LA, Mouser PJ, Williams KH, Wilkins MJ, Risso C, Holmes DE, Long PE, Lovley DR.  2010.  Expression of acetate permease-like (apl ) genes in subsurface communities of Geobacter species under fluctuating acetate concentrations.. FEMS Microbiol Ecol. 73(3):441-9.
Gardocki M E, Lopes JM.  2003.  Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site.. J Biol Chem. 278(40):38646-52.
Kashefi K, Lovley DR.  2003.  Extending the upper temperature limit for life.. Science. 301(5635):934.
Feng X, Rich SM, Akiyoshi D, Tumwine JK, Kekitiinwa A, Nabukeera N, Tzipori S, Widmer G.  2000.  Extensive polymorphism in Cryptosporidium parvum identified by multilocus microsatellite analysis.. Appl Environ Microbiol. 66(8):3344-9.
Quinteros R, Goodwin S, Lenz RW, Park WH.  1999.  Extracellular degradation of medium chain length poly(beta-hydroxyalkanoates) by Comamonas sp.. Int J Biol Macromol. 25(1-3):135-43.
Reguera G, McCarthy KD, Mehta T, Nicoll JS, Tuominen MT, Lovley DR.  2005.  Extracellular electron transfer via microbial nanowires.. Nature. 435(7045):1098-101.
Lovley DR.  2008.  Extracellular electron transfer: wires, capacitors, iron lungs, and more.. Geobiology. 6(3):225-31.
Lenz RW, Farcet C, Dijkstra PJ, Goodwin S, Zhang S.  1999.  Extracellular polymerization of 3-hydroxyalkanoate monomers with the polymerase of Alcaligenes eutrophus.. Int J Biol Macromol. 25(1-3):55-60.
Dangoria NS, Breau WC, Anderson HA, Cishek DM, Norkin LC.  1996.  Extracellular simian virus 40 induces an ERK/MAP kinase-independent signalling pathway that activates primary response genes and promotes virus entry.. J Gen Virol. 77 ( Pt 9):2173-82.

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