Publications

2009
Martz E.  2009.  Proteopedia.Org: a scientific "Wiki" bridging the rift between 3D structure and function of biomacromolecules.. Biopolymers. 92(1):76-7.
Mouser PJ, Holmes DE, Perpetua LA, DiDonato R, Postier B, Liu A, Lovley DR.  2009.  Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation.. ISME J. 3(4):454-65.
Yi H, Nevin KP, Kim B-C, Franks AE, Klimes A, Tender LM, Lovley DR.  2009.  Selection of a variant of Geobacter sulfurreducens with enhanced capacity for current production in microbial fuel cells.. Biosens Bioelectron. 24(12):3498-503.
Deangelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK.  2009.  Selective progressive response of soil microbial community to wild oat roots.. ISME J. 3(2):168-78.
Handa N, Amitani I, Gumlaw N, Sandler SJ, Kowalczykowski SC.  2009.  Single molecule analysis of a red fluorescent RecA protein reveals a defect in nucleoprotein filament nucleation that relates to its reduced biological functions.. J Biol Chem. 284(28):18664-73.
Long JE, Renzette N, Sandler SJ.  2009.  Suppression of constitutive SOS expression by recA4162 (I298V) and recA4164 (L126V) requires UvrD and RecX in Escherichia coli K-12.. Mol Microbiol. 73(2):226-39.
Holmes DE, O'Neil RA, Chavan MA, N'guessan LA, Vrionis HA, Perpetua LA, Larrahondo JM, DiDonato R, Liu A, Lovley DR.  2009.  Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments.. ISME J. 3(2):216-30.
Griffith KL, Fitzpatrick MM, Keen EF, Wolf RE.  2009.  Two functions of the C-terminal domain of Escherichia coli Rob: mediating "sequestration-dispersal" as a novel off-on switch for regulating Rob's activity as a transcription activator and preventing degradation of Rob by Lon protease.. J Mol Biol. 388(3):415-30.
Garcia-Maruniak A, Abd-Alla AMM, Salem TZ, Parker AG, Lietze V-U, van Oers MM, Maruniak JE, Kim W, Burand JP, Cousserans F et al..  2009.  Two viruses that cause salivary gland hypertrophy in Glossina pallidipes and Musca domestica are related and form a distinct phylogenetic clade.. J Gen Virol. 90(Pt 2):334-46.
Klingbeil MM, Shapiro TA.  2009.  Unraveling the secrets of regulating mitochondrial DNA replication.. Mol Cell. 35(4):398-400.
Centore RC, Leeson MC, Sandler SJ.  2009.  UvrD303, a hyperhelicase mutant that antagonizes RecA-dependent SOS expression by a mechanism that depends on its C terminus.. J Bacteriol. 191(5):1429-38.
2008
Lienkamp K, Madkour AE, Musante A, Nelson CF, Nüsslein K, Tew GN.  2008.  Antimicrobial polymers prepared by ROMP with unprecedented selectivity: a molecular construction kit approach.. J Am Chem Soc. 130(30):9836-43.
Postier B, DiDonato R, Nevin KP, Liu A, Frank B, Lovley D, Methe BA.  2008.  Benefits of in-situ synthesized microarrays for analysis of gene expression in understudied microorganisms.. J Microbiol Methods. 74(1):26-32.
Kashefi K, Moskowitz BM, Lovley DR.  2008.  Characterization of extracellular minerals produced during dissimilatory Fe(III) and U(VI) reduction at 100 degrees C by Pyrobaculum islandicum.. Geobiology. 6(2):147-54.
Mahadevan R, Yan B, Postier B, Nevin KP, Woodard TL, O'Neil R, Coppi MV, Methé BA, Krushkal J.  2008.  Characterizing regulation of metabolism in Geobacter sulfurreducens through genome-wide expression data and sequence analysis.. OMICS. 12(1):33-59.
Tran HT, Krushkal J, Antommattei FM, Lovley DR, Weis RM.  2008.  Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.. BMC Genomics. 9:471.
Segura D, Mahadevan R, Juárez K, Lovley DR.  2008.  Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.
Feinberg LF, Srikanth R, Vachet RW, Holden JF.  2008.  Constraints on anaerobic respiration in the hyperthermophilic Archaea Pyrobaculum islandicum and Pyrobaculum aerophilum.. Appl Environ Microbiol. 74(2):396-402.
Griffith KL, Grossman AD.  2008.  A degenerate tripartite DNA-binding site required for activation of ComA-dependent quorum response gene expression in Bacillus subtilis.. J Mol Biol. 381(2):261-75.
Mahadevan R, Lovley DR.  2008.  The degree of redundancy in metabolic genes is linked to mode of metabolism.. Biophys J. 94(4):1216-20.
Long J E, Renzette N, Centore RC, Sandler SJ.  2008.  Differential requirements of two recA mutants for constitutive SOS expression in Escherichia coli K-12.. PLoS One. 3(12):e4100.
Richter H, McCarthy K, Nevin KP, Johnson JP, Rotello VM, Lovley DR.  2008.  Electricity generation by Geobacter sulfurreducens attached to gold electrodes.. Langmuir. 24(8):4376-9.
Risso C, Van Dien SJ, Orloff A, Lovley DR, Coppi MV.  2008.  Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens.. J Bacteriol. 190(7):2266-74.
Lovley DR.  2008.  Extracellular electron transfer: wires, capacitors, iron lungs, and more.. Geobiology. 6(3):225-31.
Esteve-Núñez A, Sosnik J, Visconti P, Lovley DR.  2008.  Fluorescent properties of c-type cytochromes reveal their potential role as an extracytoplasmic electron sink in Geobacter sulfurreducens.. Environ Microbiol. 10(2):497-505.

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