Publications
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Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks.. Nat Commun. 4:1755.
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2013. An Chassis for Production of Electrically Conductive Protein Nanowires.. ACS Synth Biol. 9(3):647-654.
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2020. Cleaning up with genomics: applying molecular biology to bioremediation.. Nat Rev Microbiol. 1(1):35-44.
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2003. Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.. BMC Genomics. 13:471.
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2012. Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function.. BMC Genomics. 9:471.
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2008. Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.. Int J Syst Evol Microbiol. 54(Pt 5):1591-9.
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2004. Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.
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2008. Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.. J Theor Biol. 230(1):133-44.
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2004. Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.
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2006. Conductive Composite Materials Fabricated from Microbially Produced Protein Nanowires.. Small. 14(44):e1802624.
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2018. Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.
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2010. Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens.. PLoS Comput Biol. 10(4):e1003575.
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2014. Construction of a Strain With Exceptional Growth on Cathodes.. Front Microbiol. 9:1512.
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2018. Converting carbon dioxide to butyrate with an engineered strain of Clostridium ljungdahlii.. mBio. 5(5):e01636-14.
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2014. Correlation between microbial community and granule conductivity in anaerobic bioreactors for brewery wastewater treatment.. Bioresour Technol. 174:306-10.
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2014. Correlation of Key Physiological Properties of Isolates with Environment of Origin.. Appl Environ Microbiol. 87(13):e0073121.
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2021. Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.. Microb Biotechnol. 2(2):274-86.
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2009. Cryo-EM reveals the structural basis of long-range electron transport in a cytochrome-based bacterial nanowire.. Commun Biol. 2:219.
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2019. Crystal ball. In silico biology meets in situ phenomenology.. Environ Microbiol. 7(4):478-9.
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2005. A c-type cytochrome and a transcriptional regulator responsible for enhanced extracellular electron transfer in Geobacter sulfurreducens revealed by adaptive evolution.. Environ Microbiol. 13(1):13-23.
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2011. c-Type cytochromes in Pelobacter carbinolicus.. Appl Environ Microbiol. 72(11):6980-5.
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2006. De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads.. PLoS One. 5(6):e10922.
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2010. Decorating the Outer Surface of Microbially Produced Protein Nanowires with Peptides.. ACS Synth Biol. 8(8):1809-1817.
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2019. The design of long-term effective uranium bioremediation strategy using a community metabolic model.. Biotechnol Bioeng. 109(10):2475-83.
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2012. Desulfitobacterium metallireducens sp. nov., an anaerobic bacterium that couples growth to the reduction of metals and humic acids as well as chlorinated compounds.. Int J Syst Evol Microbiol. 52(Pt 6):1929-35.
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Department of Microbiology