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Morita YS, Velasquez R, Taig E, Waller RF, Patterson JH, Tull D, Williams SJ, Billman-Jacobe H, McConville MJ.  2005.  Compartmentalization of lipid biosynthesis in mycobacteria.. J Biol Chem. 280(22):21645-52.
Rand PW, Lacombe EH, Smith RP, Rich SM, Kilpatrick CW, Dragoni CA, Caporale D.  1993.  Competence of Peromyscus maniculatus (Rodentia: Cricetidae) as a reservoir host for Borrelia burgdorferi (Spirochaetares: Spirochaetaceae) in the wild.. J Med Entomol. 30(3):614-8.
Lovley DR, Phillips EJ.  1987.  Competitive mechanisms for inhibition of sulfate reduction and methane production in the zone of ferric iron reduction in sediments.. Appl Environ Microbiol. 53(11):2636-41.
Deangelis KM, D'haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport K W, Goodwin L et al..  2011.  Complete genome sequence of "Enterobacter lignolyticus" SCF1.. Stand Genomic Sci. 5(1):69-85.
Jung J-H, Kim Y-T, Jeon E-J, Seo D-H, Hensley SA, Holden JF, Lee J-H, Park C-S.  2014.  Complete genome sequence of hyperthermophilic archaeon Thermococcus sp. ES1.. J Biotechnol. 174C:14-15.
Jung J-H, Lee J-H, Holden JF, Seo D-H, Shin H, Kim H-Y, Kim W, Ryu S, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.. J Bacteriol. 194(16):4434-5.
Jung J-H, Holden JF, Seo D-H, Park K-H, Shin H, Ryu S, Lee J-H, Park C-S.  2012.  Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.. J Bacteriol. 194(17):4769-70.
Kim Y-T, Jung J-H, Stewart LC, Kwon S-W, Holden JF, Park C-S.  2015.  Complete genome sequence of the hyperthermophilic methanogen Methanocaldococcus bathoardescens JH146(T) isolated from the basalt subseafloor.. Mar Genomics. 24 Pt 3:229-30.
Phillips EJ, Lovley DR, Roden EE.  1993.  Composition of Non-Microbially Reducible Fe(III) in Aquatic Sediments.. Appl Environ Microbiol. 59(8):2727-9.
Griffith KL, Wolf RE.  2002.  A comprehensive alanine scanning mutagenesis of the Escherichia coli transcriptional activator SoxS: identifying amino acids important for DNA binding and transcription activation.. J Mol Biol. 322(2):237-57.
Segura D, Mahadevan R, Juárez K, Lovley DR.  2008.  Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens.. PLoS Comput Biol. 4(2):e36.
Yan B, Methé BA, Lovley DR, Krushkal J.  2004.  Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family Geobacteraceae.. J Theor Biol. 230(1):133-44.
Yan B, Núñez C, Ueki T, Esteve-Núñez A, Puljic M, Adkins RM, Methé BA, Lovley DR, Krushkal J.  2006.  Computational prediction of RpoS and RpoD regulatory sites in Geobacter sulfurreducens using sequence and gene expression information.. Gene. 384:73-95.
Yoon S, Im J, Bandow N, Dispirito AA, Semrau JD.  2011.  Constitutive expression of pMMO by Methylocystis strain SB2 when grown on multi-carbon substrates: implications for biodegradation of chlorinated ethenes.. Environ Microbiol Rep. 3(2):182-8.
Sun J, Haveman SA, Bui O, Fahland TR, Lovley DR.  2010.  Constraint-based modeling analysis of the metabolism of two Pelobacter species.. BMC Syst Biol. 4:174.
Feinberg LF, Srikanth R, Vachet RW, Holden JF.  2008.  Constraints on anaerobic respiration in the hyperthermophilic Archaea Pyrobaculum islandicum and Pyrobaculum aerophilum.. Appl Environ Microbiol. 74(2):396-402.
Landau M, Mayrose I, Rosenberg Y, Glaser F, Martz E, Pupko T, Ben-Tal N.  2005.  ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.. Nucleic Acids Res. 33(Web Server issue):W299-302.
Ashkenazy H, Erez E, Martz E, Pupko T, Ben-Tal N.  2010.  ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.. Nucleic Acids Res. 38(Web Server issue):W529-33.
Glaser F, Pupko T, Paz I, Bell RE, Bechor-Shental D, Martz E, Ben-Tal N.  2003.  ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.. Bioinformatics. 19(1):163-4.
Sena CBC, Fukuda T, Miyanagi K, Matsumoto S, Kobayashi K, Murakami Y, Maeda Y, Kinoshita T, Morita YS.  2010.  Controlled expression of branch-forming mannosyltransferase is critical for mycobacterial lipoarabinomannan biosynthesis.. J Biol Chem. 285(18):13326-36.
Rodrigues JLM, Pellizari VH, Mueller R, Baek K, Jesus Eda C, Paula FS, Mirza B, Hamaoui GS, Tsai SMui, Feigl B et al..  2013.  Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities.. Proc Natl Acad Sci U S A. 110(3):988-93.
Walk ST, Xu G, Stull JW, Rich SM.  2009.  Correlation between tick density and pathogen endemicity, New Hampshire.. Emerg Infect Dis. 15(4):585-7.
Scheibe TD, Mahadevan R, Fang Y, Garg S, Long PE, Lovley DR.  2009.  Coupling a genome-scale metabolic model with a reactive transport model to describe in situ uranium bioremediation.. Microb Biotechnol. 2(2):274-86.
Fukuda T, Matsumura T, Ato M, Hamasaki M, Nishiuchi Y, Murakami Y, Maeda Y, Yoshimori T, Matsumoto S, Kobayashi K et al..  2013.  Critical roles for lipomannan and lipoarabinomannan in cell wall integrity of mycobacteria and pathogenesis of tuberculosis.. MBio. 4(1)
Tumwine JK, Kekitiinwa A, Nabukeera N, Akiyoshi DE, Rich SM, Widmer G, Feng X, Tzipori S.  2003.  Cryptosporidium parvum in children with diarrhea in Mulago Hospital, Kampala, Uganda.. Am J Trop Med Hyg. 68(6):710-5.

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